AMCG00004822


Basic Information

Item Value
gene id AMCG00004822
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4163753 ~ 4191197 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004822
ATGGAGGAGGTTGCTGTAGCTGAAAGCATCTGCCCATCCAACGTGCCGCACAGGGCAGGTGTGTGGAAGAAATGTGATGCTGCCCTGCCACTGGTGGACAGCAGCCCCTCCCCGGAGCCTGTGCTGTGTTCCCCTGTCCTCCATCAGGCACCAGGCTCGGCCGTATCAGCACTGCAGTCTAAAGTGAAAGCCCTGTCTGAGCGCAGAGCTGCAGGCAAGGAAGAGAAGGGAGCATCACTGTGCACACAGAGAAGCCACAGCGTGGCCCCCACTGGGCGACAGGTTCCGGGACAGCAGGTCTGCAACGATGAAGAGGTAGACCCCAAGTTCCAGGTTCACACCTACCTGACAGACAACGTCCTGCACAGCGAGCAGGAGGAGCAGAACAGGGACTCGGACGAGATGGGCACTCTATCCAGCTTGGCCCTGCCCAGAGGCCTGGGGGAGGGGGCCAGTCTGGAGAACCTGTCCAATGGGAACGGCCTCCTCGAGGAGCCGCCCACCAAGCCCTGGGCCCCCCCTAAGGGCTTCTGGAAAGCCACCCGGCCAGAGACCCTCCTCCTGAGCGATAGCCCTCAGAAACCCAGTGATTGGTCTCTCAGTGCCGAGCCTCAGGACCAGCTGTGGGGGCTCTCTGGCCACAGGAAGCCCCGGCCAGGGGGACCTCAAATCCGAAGGGAGCTGCAGAGGTCTGACAGCTTGGAGAGTCACCTGAGGAGGGCTGTGAGGCAGGGGCCACCGCTAGGGGGTTTATGGAGAGCAGACAGCTGGGAGAGCGTGTGCAGCAACAGTAGCGCACTGTCCCTGGCTGAGAGGGTGGAGATGAACAGGGGCATCCTCAAGCAGATGCTCAACAAGCCAAAGTGCAAGGAGCCTGAGACTGGGCTGCACAGCCCTGAGCATAAGGTCGACGATCTTTCTGAATGCAACGGAAGAGAAAGGCCCTCTGATGAGAGACATGACATCAGGGCCTTTGTTTCCTGTGAAGAACTGCCGCTGAGCCCCCGGCATGAGCAGGCCAAGCGGCTGCTGGAGAGAGCCCGAATGAAGGCCCGATCTCACCCTCTCAAAGCCGACCACAGCATCCTGCCTGTCCAGAAAGACACCCTGGAGCCATCAGGGAACAGTCGTCTGCGGAGGGGACTGACGGGGAAGGAGGGGTCGGCGCCTGCATGCGGGAACCTCAGTGACTCTTCCAGCGGAGACTCGGGCTGCGGGCCCCGGCGGCGGCACGGACAGTCTCCCACCAGGGTGCGTTTCGAGGACGAGTCAGCGCAGGACGCGGAGGTGCGCTACCTGGAACGGCTTCAGCAGAGGAGGAGGGCAGCCGAGCGGGGGCAGGGCCTCCTGGTCTCCAAGCCCCACCTTTCCTCCTATATCAACGGGGTTCCCACCAAAAGAGAGGGTGGTTCGGGCAAAGCAGAGCGAGGTCGGAGCCCTGAGGGAGCCCCTTTATGGAGCAAAAAGACCAGGAGGAACCATGAGGGGAGTCACGCCAACACAACTAGCTCTGACAAGGCTGGCAAGAAGTGTAACTCATGCGGGTCATTCCTCGAGGGGGCAGATCAGAGTTTACTGCTGAGCAAGCAGGGTCAAATCCACCTCTCTAACACTCATGCCCTGCTGCAAGAGGTCTGCCCCTATAAACTGGAGTCCACAGTAAAGGCGATACCGTGCTGGGTGCCCCCGTCTCACCACCGCGTCCGAACTGAGCGCATCAAGGAAACATACATTGGGGAAGTTACCGCTATTGATGACATAGACTCCGGGAGAGAAGACGGGACTTACAGACCAGCAGGTGACACCGACCACATGAGTGTATCCGGACAGGCCTTGTACAGGCAAGAAGGGAAGGGAAATCTGAGCAAGGACTGTTTGGAAGAAACACCAAGAAATGGCACTGGGGAAAACTGCCAATCTCTGAACAAAACCAAGAAGAGATCTAAAATTATCGATGGGGGTATTGGAGGCACGAACAACTACGGTAGAGAAGTTGCTGCCATCAATGACCAAGACATGGCTCTGCCTCAAGAGAACCCAAGGCCCAGTCCCAACGGAGCAGAGAATGGATCTCCCAGCTCCAAAAGTACAACATTGCCTCCCAACCCTTATAACACAGAGCTGAATTCTCATGTTCCTTCTCCAAGCACAGACGAGGTCCCAGTGCCGCCACTGGTGGAAGTGCCAGTGTGTAACACCCACCCTAACTCTGACCTCGGCCCCTCTTCTATGCAGCCCAAGAAATCTGCTTTGAAAAGTGGGTCCAAGAACAGGCCCAACGGTCAACGCGTCGTGAAGGTCCTGCCCTCTCTGCAGTACCGCCTGATCCACTTAGACACCGAGGACCAGGATTCATACTTTTCTCAGGGCGGGGACCCCCAGGGCAGTGACCATCATGCCAGCCTGAACTCCCTCCACCATTCTCTGGACGAGCACCTGTGCGCCGTGCTGAGCTACGGCTCGGAGGAGTTGGCCAATGAAAATGGACGTCGCCAGCCATGCGTTTCCACTAACAACTGCAACAACACCCACACTTCCAGACCGGCCTCCTTGAAGTGTGCCGCCACCAGAGCTGTGGGCGACCAGAGTGTGCCAGCTGCGCTGGAACTGAGCAACACTGCCTCTGAATCAGGTCACCAGCTGAATGGGAGTTTCTACCACCTGGCAGCCAACACTGTGCAGCTCCCAGAATTCCACAACACACGTTCTGAGCCGCTGTCTAATGGGGACTCGAGACACAGAGGACCTCTGAAAGCAGAACATACAAGAGAAAGCACCGCTGCTACTGACTCAGCGAAGAACTTGGAGATGCGGGAGGGTCGGCCCAGGTTGTCCCTCAGGAGGTTCCTCTCGGCCATCAGCCAAGGCACCGTGGGCAAGCTGGGCAAAGGCCGCTCCAGCAGCATGGAGCACTTGAGCGGCACTCCGATAGGCAGTGGCAGCCCACCCTGTGCCCCACACAAGCACAGCGGCCAGCTGAAGAAAACGCCTTCCCTGCAGTCACTGCGCCTGGGGTCTCCTTTCTCCCAGCTCCGCAAAGCCTCTTCGGTCCAGAGCCTCCAGTCACCGAAGAGAAAGGGCGATCGCTCCAGTGCCTACCTGGTGGGGGAGCCATCCTCCTTCAGCCCAACACACAGGGGCCTTCAGCGGGCTCTCAGCGTGGAGGACGTAGGCTGTCCCAGTGGCGTGCGGGCAGTGGGGCGAGTGGCACAGGCTTTTGCCGATGGGACTCTCCTCTTAGAACTCAGCCACCCCGCCAACGGACCTTTCGGGTTCGTCATCTCGCGGGGGAAAGGAAGGCCTGACTCAGGGGTGTACGTGGACGCGATGGGAGACAGCGGCACTCAGAAGCTGTACGCAGGGCTGCTGGGCGTGGGGGACGAGATCCTGGAGGTGAATGGGGAGAAAGTTGCTGGGCTGACTCTGGAGGAAGTGACCTGGCTGATGACCGAGCACAGCACGGCCGCCATCCGCGTCCTGCGCCAGAGGAGGAGCCAGCGGTAGCCGGCGGGTAAAGGAGTGCGAAGGAAGGCCATCGCCTGTTGGGGTGCCTACATCCACATAAGTGTGCAATCTTCTTCTATTGGGAAAAGGGGTCTTTTCCTAGACCTGCAGACCACCATTCTGTGGAGTAGGATagtgttcttcaaatccagTCCTCAGGGGCCAAAATCCAGCAGTTCTAATATGACTTTGTAAAATCACCTGCATCAGACCCAGGACAGGAGGAAACATTTGTCCATTTGAGCAGAACATTTCCTTCTTAATTAAGGAGGATGAGGTAAAATGAGAAGGAGAAGCACTCCAGCCCCTGGGGGACGGGTTTTTCAAGAACACTGGCCTTATTTTGGAGTCCAACATGCAGGCCATTCACTGAAGAAATGAACAAGGAAAATGAGCAACCCAAAACCCTACCTTGCCTTGCTTGTTCCTTTCCTGTAGTATTGCTATATGTGACACAGGTATAGTGGAACCTAATAAGGTGTTCCCTCTATTCCAACCCTGACTGCCTGACAATCTCAATCCCATTGTTTTCCCAGGCTCCAGCTGTGATTGGCAGCTGCAGTCGTTCAGGATCTAATTCCTCGCAAAGGTGTAGGCACCCTTTTCAATGAGCAAAGTGGTTAACACCTGAGGAGAACAGGAGATTCCACTTCTTTGCCAAGTTATTTTGAGGTGCAGTTACATCTGGGGAGCCTGCAGGCCCAGGATACTGGAGTTACCCACCCCATGGCTAACACATTTTGCACGCAGCCCCAGTTGACAACTGCCGTGTACTGGTCTGTATAGGAAAATGGTGCAGTTTTTTATCATTTCTGCTTAACTGCACGCAGCCAGATACACAGAAAGCTTGTGTTCACACTTCACAATTCTTTTAACAGGAGCTGTCCAAAGATGGTTTTGCAGAAACAAGGTGGCAAAAAAGAAGAGACGAAAGATTAGCTGTATGTATCTCAGGTCTACCAGCCATTGGAACATTCAGACCCATTATTTACTCCATAACCTTTCATTGTATCTATGTACCTAAGACCCAAGGATTTTGGCCATGTTTCCTTAAGATTAGTATAGTTAATTATCCTTTATATTTCAAAGATATTTAGtatgcattcaaattaaaatacaaaagtatgAGTAGGTATAGATTACCGTGAGATTTTGGAAGGGTctaatggttttaaaatcacaaagatacATGACATAATACTGATAatgtgatgtttaaaataaaaaaggttcgGAGTCTGGGATGTGAAAAAATGAGACTAATCATCCATGTGTAGGAAGAACATACTCATGACGATCGCAAAGAGGGATATTATATTTGTGATTTACTCAAGTGTCCACATTgccaaaaaaaagtatttcacaaAAAGCATCAAATGGTGTTAATAGTTAGAAATGTTTTGAAGTTTTTCTGTGTTACACAATAATTGCAGAATGTGTCAAACTCTACAATGAAGTTTTTGGCTGTTGATGTTTATCatgatatgattatttttgCGTTAATGTGTACAGATAACTAAGATGGctccttttcaaatgttttcttctcgAAGGGAAAAATAAGTCATCAAAAGTTTCACTCCGGTCCTTTCTCCAAAAACTGATAAATGATGTTACAATTGGTTTGTAAGGCTTCTGCTATTTTAGCATGCTGAGTTTCACTTTATTCCCTTACAAATAAGACCATGTTAATCCTGTCTGGCTCGCTCTTGGCCTGTAATCAGATGTGACAGACCTGTATAATTTTGTCTACCCACAGGACACCGTTGAGCACAGTGAGAAAACTGTTGCCAACAATTATTTGAATCTATTTCACAGAAAAATGAAATCCCAAACTGTGTAACACATAGATGTGATTTATGTTCTTTTTCCCTCTACAGTCTTCCAGAACTAACGtttgtggaaagaaaaatgtaaaggtaTAATTTACACCAGCTGGATTTTCACATCAGTTCAATTCTTCTTAAATGTGTTGCGTCTAACTATTAATTGTTTCTGTTGAAACGGTTGTGTTTTGGACAAACATAGCTTCTGAGACATGTTTCTCAAAGCTGCTCGGCATGAACTTGCCGCTGGAAGATAATTGGTGTAACACAATGGGATATGTAAAATAGTTGCAAGAGGCAGACATATAGCAAAACAACTCAGTTAAAATAAGAACACAGCCATCAGTGATGTCACACTCAAATATGTCCCCAAGGCCACaccctataataataatataataataataataataataataataataataataataataataataataataattgttcatGTCTACTGCTTTCAAACTTTAggataataatatatgaaactACAGCTCTACATTGATGTTATCTGTAGCTTTCCTTTGGGGATGTTAACAGCAACCAAAGGCAACACAAATTAAGAAGATGGGACGACAGTTTTCATGTTATCTAACAGCCTGTCTTAGATCTTTAGTCAGATTCACTCTTCGTGTCTCTTGCAAAGCACGGCGAGCTGAGGCTTGTGTAATGCCGATATAGTTCCCTTTGTCATTTCATGGACTTTTAAAATGGGAGGACAACCGCAATCTCAAAGTAGCCAGCAGCCCATGCACATTCCCAGAtttcattgctttgcatccctTCTCCGCCCCAAACACAGCCTTTGCAGTGGCTCCTTGCCTCATTCCACACTGTGGTGGTTCTGATGGCCTTGTCCTCATTGTCAGGTCATCGTTCCCAcagtataaataaattgaaaatgagGCAATGTGTGGATTAAAATTGATCTATTTTTGTGAAGAACCAGTTTCTTCTACTTTTCTCTAACGAGTGCTTTTCTGTGACTGTGTAGACTACTCAGCTCCCTATCGCTCGAACCAAACCCACGGGAACTCTCTGTCTCACGGCTCGTAGTTCTGATAGGTCTGTAATAGCTACAGAACACATCCGTTTGTTTTGCACAAAGCTCTGGTGAAGAACACCTTCTCAAAATCAGTATTATCATAGAAAGAAAACCTTTGTATCTCTCagtttcactgtgtttttttgttacaattatttatatttacaaataataaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004822 True 6562 mRNA 0.50 9 4163753 4191197

Neighbor

gene id symbol gene type direction distance location
AMCG00004816 NA coding upstream 31638 4128226 ~ 4132115 (+)
AMCG00004817 NA coding upstream 63301 4090612 ~ 4100452 (+)
AMCG00004818 NA coding upstream 84164 4053649 ~ 4079589 (+)
AMCG00004814 s1pr1,LOC106613588,LOC106573949 coding upstream 139368 4021807 ~ 4024385 (+)
AMCG00004815 NA coding upstream 142215 4004368 ~ 4021538 (+)
AMCG00004821 NA coding downstream 33710 4224907 ~ 4225812 (+)
AMCG00004826 NA coding downstream 98612 4289809 ~ 4301784 (+)
AMCG00004825 NA coding downstream 119571 4310768 ~ 4318334 (+)
AMCG00004827 tm2d1,LOC107669801,LOC107715116,LOC107653653,LOC107731529 coding downstream 400711 4591908 ~ 4600321 (+)
AMCG00004833 NA coding downstream 812123 5003320 ~ 5058089 (+)
G143414 NA non-coding upstream 29844 4133275 ~ 4133909 (+)
G143405 NA non-coding upstream 50265 4113261 ~ 4113488 (+)
G143403 NA non-coding upstream 59897 4102262 ~ 4103856 (+)
G143380 NA non-coding upstream 74480 4084099 ~ 4089273 (+)
G143356 NA non-coding upstream 256832 3906593 ~ 3906921 (+)
G143440 NA non-coding downstream 26840 4218037 ~ 4238860 (+)
G143447 NA non-coding downstream 60512 4251709 ~ 4252089 (+)
G143526 NA non-coding downstream 660966 4852163 ~ 4858164 (+)
G143630 NA non-coding downstream 1270295 5461492 ~ 5461854 (+)
G143721 NA non-coding downstream 2309039 6500236 ~ 6500721 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 54098 4109022 ~ 4109655 (+)
G143366 NA other upstream 213916 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 768595 3377815 ~ 3395158 (+)
AMCG00004788 NA other upstream 1003544 3123081 ~ 3160209 (+)
G143075 elavl4,LOC106613894,LOC103028496 other upstream 1604673 2440541 ~ 2559080 (+)
G143471 LOC107575789 other downstream 180512 4371709 ~ 4372089 (+)
G143626 NA other downstream 1232506 5423703 ~ 5424121 (+)
AMCG00004864 NA other downstream 3417704 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 3481619 7672816 ~ 7692361 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 3527076 7718273 ~ 7734059 (+)

Expression


Co-expression Network