AMCG00004823


Basic Information

Item Value
gene id AMCG00004823
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4201008 ~ 4217993 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004823
GATGGAGATCAAATCAGCAATGGCGATAGAGGGGAAGGCGTCGAGTTTCTGCACCTCAACAGAAAATACCATCTAGACCTCATCATTATTGTTACCGAGTGATTACTGGAGTATGAGGGAGCCCAGACTTTGATGAGCACGGCCACAGCTGCAGCATGTCGATGGAGGACCCGTTTTTCGTGGTGAAGGGGGAGGTGCAGAAGGCAGTGAACACTGCACAGGGGCTGTACCAGCGATGGAGCGAGCTCCTGCAGGACCCCAGTGGAGCCACCAAGGAGGAGGTGGACTGGACCACCAACGAGCTCCGCAACAGCCTGCGCTCCATTGAGTGGGACCTGGAGGACCTAGATGAAACCATCAATATCCTCTTGCTGTGTGTCCTGTCATCAGGCAGTGTCTTCCTTAAATCTGGTGTAAGTATAGTGGAGTCCAACCCAAGGAAATTCAACCTGGACACCGTGGAGCTGACAAAGAGGAAAGCCTTTATCACCAGTACACGGCAGATTGTGAAGGAAATGAAGGACCATATGTCTAGCCCTATGGCACAGGCGATGTCAGAGCGTAAAAACAGACAGGCTCTGTTGGGAGGCAACATGACTCAAGCTCCAGGATGGCAGGCTGGGGGGAACAAATACACACGGCTGGACCGCGAGCTACAATCTGCCAACTCCCAGTTCATAGATGACCAGCAGGCTCAACAACAGCTCATCGCAGAGCAGCAGGATGATCAGCTGGAGCTGGTATCGGGCAGCATCGGCGTACTGAAGAACATGTCGCAGCGCATTGgccaggagctggaggagcaggCTGTGATGCTTGACGACTTCACTCACGATATGGACAACACCCAATCCCGGCTGGACAACGTCATGAAGAAGCTGGCCAAAGTCTCCCACATGACCAGTGATCGACGCCAGTGGTGTGCCATCGGGATCCTCCTGGCCATCCTGTTTGTAGTGCTGATTCTCTTCTTCGTCCTGTGATCAGTTGAAGCTCCCTCAGACTGTGCTGATTGAGGACCCGGTCTCCCTGAGCGTTGGACTTGTACAGTGAAGAGACGGCAGAACCTTTTTCACTCCtgctatgtttttcttttgtaatgttAAGAGAAACATGTTTACGGCTTTTGAGTGTTTTCTCAGTCGTCTCAATTTTTTGGTAACCACCAAAGTATAACACTGAGATTTCTCCCCGCCCCCCTCcctctttttttcattttattttggttctttctattttcttatttttatgtgaTGTTCTAATCTTAACAGAAGTGCAAGCCTAGCCTCAAACTACACGTAGCACTGTGTAGTTTGGTTTGTAGATACCCTTGAATAAATTCACACTAGCCCAAGTAGAGATTTTGTGACACACCTGAACAACTCGATTCCCCCAGTGAATTTGTCTTTGCATTGAGCGTTTCATTTGGAAGGGCCCGCATCCCTTTGCAAAGACAGTGGAAGCCCCTTCTGGTGAATTGTGAGAGCGTTTTCACAATGTTGTTACCTTCCCTTCCTGAAATTCCCAGTTTTTTGGGAAGTCAAAAAGTGGTCCCTTGCTGTCTGATATGACTGTGGTCTTGGTGTTTAAAAGATTAGGCAAAGCTCTTCACTCCAATCATGACTCTTTAACCCATGTACAACTTCTGTATTCCCCTCAAAACATAGAATTCAGGGTTGAAAACCACTAAGCCCCTTGAGGCTTAGGTCGATTGGTTTAGTTCCTCCTTTTTGCAGACTGAGTAGACGTCAAGGGCCAGTATCTGCAAACCTTTAGTGCTCCCCTGTCTCTCGGCACCTTCTCTCTCGCTGTGTTGCTGTTGGAATAATCAGTTCCTGGCAGGGTGATCACTAAATCCCTGGCTGAGACTGTAATGGGTAACCCCCGGTTCACTGCTGTCCTCCACAGCAGATCTGGGACAATGACGCTTGCATTGTATTCAAATGAGCTGACTGTTTTTAAAACCTGACTTAAAAGGGTTTTgtgatgcattattttaagGTGCTTTAATGCATTGCTGTTTTCCAGCTAAAATGGGTTTGCTTTGGTTTGCAAGTTTTACTTATTATGGTACATCTTAGCAGAAACAAAAGGACTCCCTAGATTTGTCAGTTTTGGCCAAGTGTTTTTGAGCACCAGTTATAATGCAGGGACCCAGTTAAGTTAAGATGATCACAGCTGTTGGTTGTTATTTCGTGGAGACTTTTAATCTTCAGGGTGTGAGGAACGATTGCTTTGAATGTAGATCCAGTTGAAATAAGGAAATGGTCATtagagattaattaaaatatgatgacCGTCATCAGTACTGCCAACAATGAGCCACTTATTAAGAGCATCTACTCTCTaatttgaattacagtaatttgcACTGCATTCCagatctgtctctctgttgggggaatttttttgttttgttttaattgctattgtgtgtcttttaaatactgtattccAGCCTGTGTGTACTTCTAAATACATTAACAGATGCtgtgttaaagaaaacaaacactggaacTCTTACCATTTCAGAAAGTATTTTTAAGTAGCTTTTTACAGTTACAGCACTAACACTAAACTGAGCAACTACATTAATTTTTCCGATCGTTACCACTCTCCAGCCATGTGAAATGGTGCTTTCTGGGTTGTTCAGTACCATTTAGTATTGGAATTTATCTCCCACTGACATTGttattaggaaataacactgcTGTAATTTGCCATTTATCCACAGTGttaacagcttaaaaaaaaatgtctgtgattGCTATAGCCGCACGCATGACGCTGAGCATTTTATTTGTTGCTTGAGTCTGTGTCCCACTTAATAACCAAGTTCTTTTCGGTTTTATTtcgtttttgttagttttgtttttattttttttaatttaattttttattaaagtcaatgttctattttaaaatcaatccttCTTTTTCATGCCCATCCCTTTGCACCTGGAGTGCCCAAACGTGATGTCCAGTAAGGGTGTCTTCCATAGTGAACAGTTACTGAACTAACGTCTCATGCAAGACAGCCAATTAGGAACTAACAGCCCACCTGGCAATTATGTCCCATAAACTGAAACCATGGCCTGTTGTTCATTTTGTAGCACATTTGCttgtttaatgctttttaagCTATCGGAGTGAGAGCATCTCTTTAATATCACTTGGCCCAAATTCTTCTGACCAATGAGCTTGCTGGATTTCGCTGATCATTATATATAGGGGCTCAGTATATTGTGGACTAGCAAACAGTGACAGGAGAAAGGGAGTGTGTCTggatataatattataatgagGGAATTATCAGTATTCAGCATTTAGTGTCTCATTCTCTTGTAAAGTTACCTGTTTTTCAGAGCAGACAGTGAGTTTGGATGTTGCAGCTATTTTGGAAAGTCGACTTGGTTATAAAAATGACTAAACTAGCCAGCttcctgtttaaaaaatgaaaaaactccTTTTCTTGTGTGAGGAAGCAATTTTGGATTTTCCATTGGTAATGTATGCATAGGTAGTTGACCAGGCCTGGCTTTAGATTTGGCCCCTTCACTGCAATCGAAGGAGAAACAGTGGGATCCTACATGTTATTTTTGGGCTTCGTTCCTGACCGGCTGACATTTTCAGAGCTTGTGAATAGATATCCTCAGCACAAGAACAGGAATCATGGACAAATCGTGTCTTTTGCACGCCCAGATTGTAACCACTTGATCCAGACAGCTTAAttggatttttgttgttcttaaagTTAATGATCAGTTTTCTCCTTTGCTGgacaaatctaatttaaatctCACAAACTCCAGGTGGAGCTAGGGTAGATGAGCAGTGACCCAGATGAGTTCCCAAGAGCTGACTTGTTTCCAATCTTGGTaatccccaaccccccccacctaCAGTCCAACCCCAATTTCCATTCCTCTGCACCACAGAAAACATAATATGCGGTTTTGTTTCGGTCAAATGTAGAACCAATACAGGCCTTATAAATCTATAGcagtaaatgaaaatataacgTTACTGTGCTAATGTTAGTTATGTAATATTAAACGCATAATATTAGCACATCGTACATAACAAATACCTTGACTTTTGTTTACTCTGGTGGTAGTTACTGCTGTGTGTAAAAGTTGACTCAAGGTTTCCTGGGGCTGGACTGGAGGGTGTCATTTAGCAACCCCATACCCTAGTTGAAATGAAGCAGGATGTTGTGAAGGAACCATTACATGACCTTTCTCATGCAAGTCTTTTCCCCGTGTTTTAAGAGGAGCCTCTAAACTAGAATCCCTGTACATTCAATAAGAATGTAATCGAAGAGCAGCACCCATCCAGCCTTACAGCATTTGAGCTCTTGTTTTTGAAGTGTGAAATCCAAAAAATAAAGGATCAAGAACCACTCCAACTAAAtgttaatgtataaaatatggtcCTATTGTTTCTATAACCTTCTTTAGACATCTATAATTTTCTTGTGTAAGAATCAACATGCCCATtatgcaatgtaaaaaaaaaaaaaatgaaataaaaatgtgaagcACATTATTGTACAATCAAACACTTGTCCCATTCAGGGTtgtgaatagaagaaaaaagtgATCTTGGAAGGAGGCTGTTTGCTGTGCCTATTTATAAACTGATGTCTGTGCTGAACTACTGTATGCTACTCTTGTTTGGGGTATGCAGCTCCTGATGCTACTGGAGTATGTCAATATCATTCTTTGCTCTGCCTGACCCCCACCGTTGTCATACTGTGAGGTTCATCATTGACTGGTTGACTGACTGCCAGGCCTGAGTTGAcctaaataaaagcagttgctGCGAATCATACTAATTCATTTCAAAAACGC

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006906 vesicle fusion biological_process
GO:0048193 Golgi vesicle transport biological_process
GO:0042147 retrograde transport, endosome to Golgi biological_process
GO:0016021 integral component of membrane cellular_component
GO:0031201 SNARE complex cellular_component
GO:0005484 SNAP receptor activity molecular_function

KEGG:

id description
K08498 STX6; syntaxin 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004823 True 4853 mRNA 0.42 8 4201008 4217993

Neighbor

gene id symbol gene type direction distance location
AMCG00004820 NA coding downstream 51007 4133709 ~ 4150001 (-)
AMCG00004812 dph5,LOC106613590 coding downstream 266003 3932126 ~ 3935005 (-)
AMCG00004811 NA coding downstream 286047 3908147 ~ 3914961 (-)
AMCG00004808 NA coding downstream 336929 3856496 ~ 3864079 (-)
AMCG00004801 NA coding downstream 526184 3660865 ~ 3674824 (-)
AMCG00004824 NA coding upstream 106970 4324963 ~ 4359936 (-)
AMCG00004829 patj,inadl coding upstream 221547 4439540 ~ 4482780 (-)
AMCG00004828 NA coding upstream 358423 4576416 ~ 4591430 (-)
AMCG00004830 nfia coding upstream 459480 4677473 ~ 4686323 (-)
AMCG00004831 NA coding upstream 489099 4707092 ~ 4726469 (-)
G143430 NA non-coding downstream 9727 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 92152 4107519 ~ 4108856 (-)
G143400 serpinc1,LOC102797582 non-coding downstream 102592 4094650 ~ 4098416 (-)
G143396 NA non-coding downstream 112015 4085446 ~ 4088993 (-)
G143372 NA non-coding downstream 228463 3972316 ~ 3972545 (-)
G143528 NA non-coding upstream 573697 4791690 ~ 4858146 (-)
G143539 NA non-coding upstream 767395 4985388 ~ 4985694 (-)
G143544 NA non-coding upstream 798854 5016847 ~ 5017631 (-)
G143619 NA non-coding upstream 1109722 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 2370158 6588151 ~ 6588746 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 84594 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 983779 3120229 ~ 3217229 (-)
G143145 NA other downstream 1491004 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3554397 644004 ~ 646611 (-)
G142773 NA other downstream 4070305 127778 ~ 130703 (-)
G143659 NA other upstream 1518816 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 4135996 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4618367 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4654892 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 7917385 12135378 ~ 12156378 (-)

Expression


Co-expression Network