AMCG00004828


Basic Information

Item Value
gene id AMCG00004828
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4576416 ~ 4591430 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004828
GTGAGGTGCGGTCAGCCGCAGTTAGACACTTCCGTTGGACAGTGACGACTATGGAGAGGCAGCAGGTGATGCAGGCTCTTGAGAGACTGCAAGCCAAGCTGAGGGAGAGGCATGACCAAACCCACAGCGAGAAGCTCGGGGCCCTGAAAGAAGCGCTGAGGAGCCCTCTGCTTAGCCACATCCTCACCCTGCAGCACTCCATCAAGCAGCTGAAGGACCAGCTGAACTACATGCCTCCAGATGCTGCCAGTGACTTTGACTTTTCCAAGAAGGGCCAGCTTATCTTCAGTGCCAACCAGCCCATTGGCAGCcgctatggcacacagccacaCACCGCTGCAACACCTAATGGCCATGTGCTGCAACCTTCTGGCCCTCACTCTGAAGAGTTTGACAGGAGGATCCAGGCAGCAGCAAAGgGAAGACAAATAGAATACATCAGCCTTCAGAAGCCTGTCTCTGGAGGCCTGGGCTTCAGTGTGGTGGGGCTGAAGCGTGAAGGTGCTGGGGAACAAGGAGTCTACATTAGGCAAGTGCAGCCAGGCAGCATTGCAGACCGGGATGGGAGGCTGAAGGAGAATGATCAGATCCTGGCTATTGGGGGCATGCCTCTGGATGAAAACCTCCCTCACCCACATGCCATCACCCTGCTGCAGCAGTCTATGGACAGTGTGCATCTTGTGGTGGCCAGGGACCAGGCAGACAGGAGCAATGGAACTACTCTCCAACGCCCGGATTTAATGGGACCCACTCAGACGGTCCAGTGGGGGCACGTGGAGGAGATCGAGCTGGTGAACGATGGCTCAGGGCTGGGCTTCGGGATCGTAGGAGGCAAGTCCACTGGAGTGGTGGTGCGCACTCTGGTTCCTGGCAGCATAGCAGATCGGGATGGGCGGCTGCAGACGGGAGACAACATCCTGCAGATTGGAGGGACGGATGTGCAGGGCCTTGCCAGTGACCAAGTAGTGAAGGTCCTACAGAGCTGCGGCACCCGAGTGCGCATGGTCATCGCCAGGGACCCTCTAGGCGCACCACGGCCCAAACCCCCCGCCCCAGCCTCTGCGCCCGTCTCAGCCCTTCCCCCCATCCCGCCGCGCAGGAACAGCAAGATGACAGGAATGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004828 True 1124 mRNA 0.59 8 4576416 4591430

Neighbor

gene id symbol gene type direction distance location
AMCG00004829 patj,inadl coding downstream 93636 4439540 ~ 4482780 (-)
AMCG00004824 NA coding downstream 216480 4324963 ~ 4359936 (-)
AMCG00004823 NA coding downstream 358423 4201008 ~ 4217993 (-)
AMCG00004820 NA coding downstream 426415 4133709 ~ 4150001 (-)
AMCG00004812 dph5,LOC106613590 coding downstream 641411 3932126 ~ 3935005 (-)
AMCG00004830 nfia coding upstream 86043 4677473 ~ 4686323 (-)
AMCG00004831 NA coding upstream 115662 4707092 ~ 4726469 (-)
AMCG00004832 nfia,LOC102782039 coding upstream 240971 4832401 ~ 4834300 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding upstream 477825 5069255 ~ 5094212 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding upstream 563168 5154598 ~ 5158802 (-)
G143430 NA non-coding downstream 385135 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 467560 4107519 ~ 4108856 (-)
G143400 serpinc1,LOC102797582 non-coding downstream 478000 4094650 ~ 4098416 (-)
G143396 NA non-coding downstream 487423 4085446 ~ 4088993 (-)
G143372 NA non-coding downstream 603871 3972316 ~ 3972545 (-)
G143528 NA non-coding upstream 200260 4791690 ~ 4858146 (-)
G143539 NA non-coding upstream 393958 4985388 ~ 4985694 (-)
G143544 NA non-coding upstream 425417 5016847 ~ 5017631 (-)
G143619 NA non-coding upstream 736285 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 1996721 6588151 ~ 6588746 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 460002 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 1359187 3120229 ~ 3217229 (-)
G143145 NA other downstream 1866412 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3929805 644004 ~ 646611 (-)
G142773 NA other downstream 4445713 127778 ~ 130703 (-)
G143659 NA other upstream 1145379 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 3762559 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4244930 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4281455 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 7543948 12135378 ~ 12156378 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location