AMCG00004829 (patj,inadl)


Basic Information

Item Value
gene id AMCG00004829
gene name patj,inadl
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4439540 ~ 4482780 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004829
ATGCCCTCTTATGACCAATTGAACAGTGTcctgcctgagagagaggatggagagggggaggaaacCCCTGCCTTCAGCCACTGGGGACCACCAAGGAGGGTGGAGGTGTGGCATGAGCCGTCAGAGTCTCTGGGCATCAGTATCGTTGGTGGCCGCACCGTCATCAAGAAGCTGAAGAATGGAGAGGAGCTGAAAGGCATCTTCATCAAGCAGGTCTTGGAGGACAGTCCAGCTGGCAGGACCCAAGCCCTGAAAACTGGAGACAAAATACTGGAGGTCTCCGGAGTGGACCTCCAGAATGCCTGCCACGAGGAAGCGGTGCAAGCCATCAAGAGAGCTGGGAACCCCGTCCTCTTTATCGTCCAGAGCCTCTCGGCAACACCACGGAAGCCCACTACGACAGGTGCCCCTCCCCCCATGAGACTTCCCCCACCGTACAGGGAGCCTGTGGTGGAGACGCAGGACAGGGATCAGGAGCTGGCCAGACCCAGGGAAACCTGCTTAGATATTAAAGAGGATTTGAGGCACTGgttaTAA

Function

symbol description
patj Predicted to be involved in microtubule organizing center organization; regulation of microtubule cytoskeleton organization; and tight junction assembly. Predicted to be active in several cellular components, including apical part of cell; bicellular tight junction; and plasma membrane. Orthologous to human PATJ (PATJ crumbs cell polarity complex component).
inadl InaD-like protein

NR:

description
PREDICTED: inaD-like protein isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004829 True 537 mRNA 0.57 7 4439540 4482780

Neighbor

gene id symbol gene type direction distance location
AMCG00004824 NA coding downstream 79604 4324963 ~ 4359936 (-)
AMCG00004823 NA coding downstream 221547 4201008 ~ 4217993 (-)
AMCG00004820 NA coding downstream 289539 4133709 ~ 4150001 (-)
AMCG00004812 dph5,LOC106613590 coding downstream 504535 3932126 ~ 3935005 (-)
AMCG00004811 NA coding downstream 524579 3908147 ~ 3914961 (-)
AMCG00004828 NA coding upstream 93636 4576416 ~ 4591430 (-)
AMCG00004830 nfia coding upstream 194693 4677473 ~ 4686323 (-)
AMCG00004831 NA coding upstream 224312 4707092 ~ 4726469 (-)
AMCG00004832 nfia,LOC102782039 coding upstream 349621 4832401 ~ 4834300 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding upstream 586475 5069255 ~ 5094212 (-)
G143430 NA non-coding downstream 248259 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 330684 4107519 ~ 4108856 (-)
G143400 serpinc1,LOC102797582 non-coding downstream 341124 4094650 ~ 4098416 (-)
G143396 NA non-coding downstream 350547 4085446 ~ 4088993 (-)
G143372 NA non-coding downstream 466995 3972316 ~ 3972545 (-)
G143528 NA non-coding upstream 308910 4791690 ~ 4858146 (-)
G143539 NA non-coding upstream 502608 4985388 ~ 4985694 (-)
G143544 NA non-coding upstream 534067 5016847 ~ 5017631 (-)
G143619 NA non-coding upstream 844935 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 2105371 6588151 ~ 6588746 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 323126 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 1222311 3120229 ~ 3217229 (-)
G143145 NA other downstream 1729536 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 3792929 644004 ~ 646611 (-)
G142773 NA other downstream 4308837 127778 ~ 130703 (-)
G143659 NA other upstream 1254029 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 3871209 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4353580 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4390105 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 7652598 12135378 ~ 12156378 (-)

Expression


Co-expression Network