AMCG00004831


Basic Information

Item Value
gene id AMCG00004831
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4707092 ~ 4726469 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004831
ATGACTTGTAAGTGCTGGCACAAGGGGACGCTCATCCACAAGAGGCATTCCACAAGACCCCATCAGCACATTGGGCACAGTCAGCCCAGCTGTGTCCTAGCCTTGACCCCTCTACCTCTGGGACAGCACCCCTCTGGGCTCTGGGAAGGAGAGGgACACTTGGGCTTCCAGGACAGTTTTGTCACATCGGGTGTCTTCAGCGTCACGGAGCTCATCCGAGTGTCACAAACCCCCATCGCTGCAGGGACAGGGCCTAATTTTTCCCTGGCAGATTTGGAGAGCACCTCGTACTACAGCATGAGCCCAGGAGCCATGAGGAGACCTCTCCCCAGCACGTCTTCAAGCAGCTCTGCAAAGCGCATCAAGTGCATAGAAGACGACGTGGATAGTCCAGGAGAGGAGTCCTTCTACCCTGGCCAGGGCCGGTCGCCGGGAAGTGGGAGTCAGTCAAGCAGTTGGCACGAAGTGGAACCAGAACAGGCATGA

Function

GO:

id name namespace
GO:0003997 acyl-CoA oxidase activity molecular_function
GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004831 True 486 mRNA 0.57 5 4707092 4726469

Neighbor

gene id symbol gene type direction distance location
AMCG00004830 nfia coding downstream 20769 4677473 ~ 4686323 (-)
AMCG00004828 NA coding downstream 115662 4576416 ~ 4591430 (-)
AMCG00004829 patj,inadl coding downstream 224312 4439540 ~ 4482780 (-)
AMCG00004824 NA coding downstream 347156 4324963 ~ 4359936 (-)
AMCG00004823 NA coding downstream 489099 4201008 ~ 4217993 (-)
AMCG00004832 nfia,LOC102782039 coding upstream 105932 4832401 ~ 4834300 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding upstream 342786 5069255 ~ 5094212 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding upstream 428129 5154598 ~ 5158802 (-)
AMCG00004837 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding upstream 487859 5214328 ~ 5215407 (-)
AMCG00004838 LOC106574055 coding upstream 515561 5242030 ~ 5258280 (-)
G143430 NA non-coding downstream 515811 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 598236 4107519 ~ 4108856 (-)
G143400 serpinc1,LOC102797582 non-coding downstream 608676 4094650 ~ 4098416 (-)
G143396 NA non-coding downstream 618099 4085446 ~ 4088993 (-)
G143372 NA non-coding downstream 734547 3972316 ~ 3972545 (-)
G143528 NA non-coding upstream 65221 4791690 ~ 4858146 (-)
G143539 NA non-coding upstream 258919 4985388 ~ 4985694 (-)
G143544 NA non-coding upstream 290378 5016847 ~ 5017631 (-)
G143619 NA non-coding upstream 601246 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 1861682 6588151 ~ 6588746 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 590678 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 1489863 3120229 ~ 3217229 (-)
G143145 NA other downstream 1997088 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 4060481 644004 ~ 646611 (-)
G142773 NA other downstream 4576389 127778 ~ 130703 (-)
G143659 NA other upstream 1010340 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 3627520 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4109891 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4146416 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 7408909 12135378 ~ 12156378 (-)

Expression


Co-expression Network