AMCG00004832 (nfia,LOC102782039)


Basic Information

Item Value
gene id AMCG00004832
gene name nfia,LOC102782039
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 4832401 ~ 4834300 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004832
ATGTcgaaggaagaggagagagcgGTGAAGGACGAGCTACTCAGTGAGAAACCAGAGGTCAAGCAGAAATGGGCATCACGGCTTTTGGCGAAGCTGCGCAAGGACATCCGGCCGGAGTTTCGCGAGGATTTTGTACTCACCGTCACGGGGAAGAAGGCCCCTTGCTGCGTACTTTCCAATCCAGACCAGAAAGGCAAAATGCGGAGAATTGACTGCTTACGCCAAGCGGACAAGGTGTGGAGGCTGGACCTGGTAATGGTGATTTTATTCAAAGGTATTCCGCTTGAAAGTACTGACGtTGAGAAGGCCAAGTGTATGCCCTTTTTCGTTCACTTTCTCCACGACACAGTAGTAGCCAGGCGATCCAGGACTGTGTTCAAGACTCCATGA

Function

symbol description
nfia Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain. Human ortholog(s) of this gene implicated in NFIA-related disorder. Orthologous to human NFIA (nuclear factor I A).

NR:

description
PREDICTED: nuclear factor 1 A-type-like isoform X4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006260 DNA replication biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004832 True 390 mRNA 0.52 2 4832401 4834300

Neighbor

gene id symbol gene type direction distance location
AMCG00004831 NA coding downstream 105932 4707092 ~ 4726469 (-)
AMCG00004830 nfia coding downstream 146078 4677473 ~ 4686323 (-)
AMCG00004828 NA coding downstream 240971 4576416 ~ 4591430 (-)
AMCG00004829 patj,inadl coding downstream 349621 4439540 ~ 4482780 (-)
AMCG00004824 NA coding downstream 472465 4324963 ~ 4359936 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding upstream 234955 5069255 ~ 5094212 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding upstream 320298 5154598 ~ 5158802 (-)
AMCG00004837 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding upstream 380028 5214328 ~ 5215407 (-)
AMCG00004838 LOC106574055 coding upstream 407730 5242030 ~ 5258280 (-)
AMCG00004842 NA coding upstream 454518 5288818 ~ 5291353 (-)
G143430 NA non-coding downstream 641120 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 723545 4107519 ~ 4108856 (-)
G143400 serpinc1,LOC102797582 non-coding downstream 733985 4094650 ~ 4098416 (-)
G143396 NA non-coding downstream 743408 4085446 ~ 4088993 (-)
G143372 NA non-coding downstream 859856 3972316 ~ 3972545 (-)
G143539 NA non-coding upstream 151088 4985388 ~ 4985694 (-)
G143544 NA non-coding upstream 182547 5016847 ~ 5017631 (-)
G143619 NA non-coding upstream 493415 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 1753851 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 1800420 6634720 ~ 6634963 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 715987 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 1615172 3120229 ~ 3217229 (-)
G143145 NA other downstream 2122397 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 4185790 644004 ~ 646611 (-)
G142773 NA other downstream 4701698 127778 ~ 130703 (-)
G143659 NA other upstream 902509 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 3519689 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 4002060 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 4038585 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 7301078 12135378 ~ 12156378 (-)

Expression


Co-expression Network