AMCG00004838 (LOC106574055)


Basic Information

Item Value
gene id AMCG00004838
gene name LOC106574055
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5242030 ~ 5258280 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004838
ATGCTAACGTGTGTGTTGGTTATCTGCCTGACCCAGGGTATCGCGGCAGTGGTGGACATGGAGGACAGCTCCTCGTTGGGCAAAGTCAGCGGCTCGACAGAATCGGTGTGCACGGTGAACAGCGAGGAGTTCGTGCTTGTGTCCCAGCAGGCCGAGGATTCCCCCTCCAGCAGAGAGAAGAAGCCGCGGCTCAAGATGTCTTCCAATGGCAGTGAGCAGCTGGAGAAAGCGATGGAGGAGATTCTGGAGGAGCAAGGGGAGAAATATGAACCTAAACGAGAGAGTCCACAGCCCCCCGTGGAGAGCCCTGTAGCTTTGGATAATGAGAGAGCCCCTGTAAGCCTAGAGTTGGAGACTTCTCCTACAGTTGTGGAGGAGGACAGCGTGTTGTTCAATAAGCTCTCGTACCTTGGCTGTATGATGGTCCGGGCACCACGCAATGAAGCTGAAGCTCAGAAGGCAATGGCCACCTTGAGGGCCGACTGTGCCATTCCTATTCCTGTGACTCTGTATGTGCCAAATGTGCCTGAGGGGTCTGTCAGAATAATAGACCAAGCCTCAGGCACAGAGATAGCCTCCTTTCCCATCTACAAAGTGCTGTTCTGTGCAAGGGGCTGTGATGGGACTCCGGAAGGGGACTGCTTTGCCTTCACAGAGAGCTATCGGAGCTGTGAAGACTTTCAGATCCACGTCTTCTCCTGTGAGATCAAGGAAGCTGTCAGTCGCATCCTGTACAGTTTCTCCACTGCGTTCCGCCGGTCCTCCAAGCCAGCGCCTGACGTGAAAGACGGCTCCCTTCCGACCCCAGAAAGTGACGTGTTCACCTTCACTGCTTCACTGGAGGTCAAAGAGGATGATGGGAAAGGAAACTTCAGTCCAGTCCCAAAGGACAGGGACAAATTCTACTTCAAGCTGAGACAGGGGGTTGAAAAGAAAGTGATGGTTACCATCCAGCAGATTACCAACAAAGAGCTCGGAATCGAGAGGTGTTTCGGGATGCTGCTCAGCCCAGGCCAAAAGGTTCGAAACAGTGACATGCACTTATTGGATATGGAGTCCATGGGGAAGAGTTCTGATGGAAAGGCATACGTGATCACTGGAACTTGGAGTCCCAATATTCCTCCTTTTCAGGTGTTAAACGAGGAGACCCCAAAAGACAAACAGGTGTACATGACGGTGGCGGTGGACTTGGTTGTCACGGAGGTAGAAGAGCCAGTCCGCTTCCTTCTGGAGACGTTAGTGCGGGTTTACCCGGCCAACGAGAGGTTTTGGTACTTCAGCAGAAAGGCCTTCACCGAGACCTTCTACCTTAGACTCAAACAGGTACCCACAATGGCAGGCAGCGGGACACTAGGGAAATTAATAATCTGA

Function

NR:

description
PREDICTED: rab GTPase-activating protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004838 True 1371 mRNA 0.53 9 5242030 5258280

Neighbor

gene id symbol gene type direction distance location
AMCG00004837 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding downstream 26623 5214328 ~ 5215407 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding downstream 83228 5154598 ~ 5158802 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding downstream 147818 5069255 ~ 5094212 (-)
AMCG00004832 nfia,LOC102782039 coding downstream 407730 4832401 ~ 4834300 (-)
AMCG00004831 NA coding downstream 515561 4707092 ~ 4726469 (-)
AMCG00004842 NA coding upstream 30538 5288818 ~ 5291353 (-)
AMCG00004840 NA coding upstream 87095 5345375 ~ 5359669 (-)
AMCG00004841 NA coding upstream 109384 5367664 ~ 5380508 (-)
AMCG00004844 nrd1a,nrdc,LOC106613566,LOC107738192,LOC105906141,LOC105011400 coding upstream 123873 5382153 ~ 5397343 (-)
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding upstream 141928 5400208 ~ 5412801 (-)
G143544 NA non-coding downstream 224399 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 256336 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 383884 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 1050749 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 1133174 4107519 ~ 4108856 (-)
G143619 NA non-coding upstream 69435 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 1329871 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 1376440 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 1376778 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 1537653 6795933 ~ 6796223 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 1125616 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 2024801 3120229 ~ 3217229 (-)
G143145 NA other downstream 2532026 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 4595419 644004 ~ 646611 (-)
G142773 NA other downstream 5111327 127778 ~ 130703 (-)
G143659 NA other upstream 478529 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 3095709 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 3578080 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 3614605 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 6877098 12135378 ~ 12156378 (-)

Expression


Co-expression Network