AMCG00004841


Basic Information

Item Value
gene id AMCG00004841
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5367664 ~ 5380508 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004841
ACGGAAAAGAGAGGAGGGAAGCGCTGCTTTAGTTAGCTTGCAGGTTGTCTCCGATGTCCGTCATGCAGCCGCCGGCGGACACTCCGCCAGAGCAGCGCATCATGATCACGCATCTGCCCGGGACAGAGGGCCAGGACAGGGATCTAAAGGAAAACATTGGATCAGTTGTACCAGCAAAGATCCTGAGTGCAGCCCTGCAGGACGAGTTCATCCCAGAGGAGATTCTGATGACCCTCACCTCCGTGGTCCATCCCGTCAGTCCTGTGGAAAGACTGGGACCCCCCAAGATCTCAAAAACACCTAAGGATTTCAAGGGCCACATTCTGCGAGGGACGGACCCGGTCTGGCATCATCCTGTCCGCCGTAACAAATTCAAGTACTTCATAGACCAACCCACTTCACTGACAGGCGCTGGAAGGGATATCTCCTTCCTGTGCGATGCAGTTTTAAGGACAGAGAAGGACAAGCCACTTCTGCCTCCCACTTCAGACAGGAGCAGTGTGCATGGCCAGCAAGAGGGCCTTCACAAGgACTTCCATCTGACAGAAAGTTTGATTCCAGAGGAGTATCACATTGTGAAGAACAAAGGAGTGCTGGGACTGGAGTACTACGAGGATAAATACACAGTCCTATTAGAAGATGAGGAGAAAAAGCTCAGAGTGTTTCCATCAATGAAGCCCAGTGGAAGGTTTGAGGCTATCCAGTTGATGAAGATGCACAGCCTCTTAGAGCTGGTGAAGAAGGAGCAGAGCATCTACAACGTTGTCTTCCACGAGCTCATTCGCCAGGTCTCGGTGGAGTGCGCTGAGCGAGGGGAGCTGCTGTCTAAACTCAGGCAGAGATATGTTTTGCTCATGGACCGGATTCCTCGGCAGCTCAAGAGCCTCCATACTGAGACCCTGGCACAGAGGGCACTAGACCGGCGTCTCACTGAGGAGATCATCGGCTTCAAAGGCTCCGTTGGGAAGCTCAACAATGAGCTGGTCCAGGTGAGAGAACATGACCTGCGAGTGTCCAGGGCAGCCGAGAGAGCCCAGGAGGAGCTAGCCAGAGCTCTACAGCAGTCCCAGAAGAACGCAGATCTAGTTGGAGAGTATCATGACCTGTATGAGCTGCAGAGGCGCAGACTGGAGAGTCAGCTGGCTCGAGTCACTGAAGAGAAAGATCTGTGGAGCAGGGTCACTTACCGCCTAGCACTCAAGGTGATTAATGCAAATAACCTTCATATAGCAAGCAAGCTCCAAGTTAGTGAACAAACCTGGGCCAAAGCGGCAGAACATTTTACAGTTCTCCTAAAATCCAAGGACACAGAAGACCTCAGCCAGATTTTGCGACTAGCAGACCACTGGAAAGAAATGGCAGGCCAGTTGTGGCGGGACCTGCACCAGGCAGAGAACTCTGGCTTTGAGAAAGTGAAGCTGGTTGAAGCTGGGATTGCCAAATGGCAGACGTTCTGTGATGACAAAATCCATGCTGACATGGGACCTGAGAAGGACCCAGAGCAGGTTCTGTTTCTGGACTTAAGAGAGTGGGAAGAGATGCTCACAAAGGAATGTGAGCGCTACGGAGGGGAGAGGCTGCTGTCCAATCAGGAGACGCTGAAGACCATGAGTCAGCTGCAGGAGAAGTGGGTGGATGTGGGGCTGCTGCTGTTCAGCCGGCACCTTGGGTCTGATGGGAAGAGTCCTCCGGCCCAGGCAGTGATGATGCAACTGGGCAGAACTCTAGAGAAGCTTCACAAGCAACTAGGGACCAGAATCACCGGAGACAGCGGCATCCACAAGATTCTGATGTCTTTGGTTGGGGAAATGGAATTGTGGTCTGCCAGGCTGAATGCTGTCGGCGGGCATCCAGGCATGCTGCCCCATTCGGACTGGCTGAAGCTAACCAATACCTTGTGTGGTTGGACGACTCTTGTGGAGCAGGCAATGCAGGTTATCAGCTCCAGCCAGCTGGAGAATGAATGGATCAGGCAGATGGCTCACGTGAGGCTAGACATTGAGGAGGTTTGCGTGGCGCTGCAGGAGTTTCTCTCTGTGGCATCGAACACAATTGAATCTGAGAACTCCAGGCTTACAGAGGAGGTCAGTGCCTTACACAGCTCCCTGACCCAGTGGATGGTACAGCTGCTGCTCCAGATGGCGCCTGACTGTGGCGAGGACACACTCCAGCAGCCCCCCGAGAATGAGGCCTCGCAAGCAGTGGCAACTCTCAAGCTGGAAGAAGAGGCAACACATCTCATGCAGAAGCTCGACCACTTCACCAAGCGTCTCACTGGatCCTGCCAGGCCTTTGTGGAGGAAGAGGTTCAGAAACAGATGCACCAAGATGAGCCAGAAGATGGACTGTATGAGCTCCAGAAACTCCAGAGGGAATGCTCGGAGTGGAGCGAGACCTGTCAGATCCTTCTGTCTGAGATGAAAGGGAATCCAGTGGAAGGGCTGACCGCTTCTGCCCAGGCGGTACCGTCAGACACAGACTTACTCTCTGCAGAGCAAAGCGAGGAGTCCTTTatggCAACAGACATCGAGGAGGTACCAAAACCACATGCTGTGGAGGGCTGGAAAGAGGAGTCTGATGACAACACAGCAGTCAAGTCAGCCAAGGACAGTGAGGGAGATTCTATCTTGAGGTTTATAGGTCTTGACGGCAACATCCGAGAGAAGACCCTAAGGGAGGCAACAGTGTCATTGCAGGGAAGCGATGCGGTGGTGGGCCGTCCCAAGACCCCCAGTGCACAGAAAGCGTTTGACGCCCTGGCTGCGGTCGAGGTTCTACATCAGGAGCTCTTgaGTGCTGAGGAGAGAGCTCAAAGGGCTGAGGAGAGAACCCTCAGCACAGAGGAGCAGCTGCACTCGGCTCTGGAGAAGATCCAGGATCTGGAGAGGCAGCTGCAGGGCAGAGCCCGTCTAGAAGAGCCGGAGGAAAAGAAGGTAGTGGCACCCATCAAAGTTCACCCTCCTGAAGAACTGGCAACCGAGAGATCCAAATCCACTCTGAAAAAGTCTGAGAAACACACCAAGAGGTCTTGAGACTCTAACGTCTAAGCTGAACATCCTAGATATATTGTCTTCACCGCAATAAATATGTTTCGGGGtcaaaaattaatattttacaattcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004841 True 3122 mRNA 0.53 26 5367664 5380508

Neighbor

gene id symbol gene type direction distance location
AMCG00004840 NA coding downstream 7995 5345375 ~ 5359669 (-)
AMCG00004842 NA coding downstream 76311 5288818 ~ 5291353 (-)
AMCG00004838 LOC106574055 coding downstream 109384 5242030 ~ 5258280 (-)
AMCG00004837 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding downstream 152257 5214328 ~ 5215407 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding downstream 208862 5154598 ~ 5158802 (-)
AMCG00004844 nrd1a,nrdc,LOC106613566,LOC107738192,LOC105906141,LOC105011400 coding upstream 1645 5382153 ~ 5397343 (-)
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding upstream 19700 5400208 ~ 5412801 (-)
AMCG00004848 NA coding upstream 334442 5714950 ~ 5730640 (-)
AMCG00004853 NA coding upstream 529706 5910214 ~ 5914976 (-)
AMCG00004854 zranb2 coding upstream 536258 5916766 ~ 5939825 (-)
G143544 NA non-coding downstream 350033 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 381970 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 509518 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 1176383 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 1258808 4107519 ~ 4108856 (-)
G143759 NA non-coding upstream 1207643 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 1254212 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 1254550 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 1415425 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 2225532 7606040 ~ 7666482 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 1251250 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 2150435 3120229 ~ 3217229 (-)
G143145 NA other downstream 2657660 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 4721053 644004 ~ 646611 (-)
G142773 NA other downstream 5236961 127778 ~ 130703 (-)
G143659 NA other upstream 356301 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 2973481 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 3455852 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 3492377 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 6754870 12135378 ~ 12156378 (-)

Expression


Co-expression Network