AMCG00004842


Basic Information

Item Value
gene id AMCG00004842
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5288818 ~ 5291353 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004842
ATGACAGCTGGAACTGTTGTTATTACCGGAGGAATACTAGCAACAGTGATACTACTGTGTATCATAGCTGTGCTCTGTTACTGTAGGCTCCAGTCGGATGGCCCAGCCCAGCCACACTTTGCCTGCAACGCATGCAGCGCCTCGGGAGTCGACGGCTCTGCCCTCACCCCTTTGGCCCTGCCCCCTGACCCCTGCCCGCCGGGGggtgccgccgccgccgccactGCTTGCACTGCCTCCCGCAACTACTGCCCCACCTGCTCGCCTTACAGCTCCCCCTTTTACATACGGACCACAGACGAGATGCGCAACGGGGGCGAGAGGATCACCTACATGCCCGCGCACTACGAGAACCCCGCGCTGTCCATCAAAATGTCCTCCCTGCAGAGTTTTCCGATGAGTCGCCAGGGCCAAGACTTTTTCAGCAACACTGGGGCCATCAGTACTGAGGTGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004842 True 456 mRNA 0.60 2 5288818 5291353

Neighbor

gene id symbol gene type direction distance location
AMCG00004838 LOC106574055 coding downstream 30538 5242030 ~ 5258280 (-)
AMCG00004837 gpr52,LOC107599442,LOC107715120,LOC107655251,LOC107592687,LOC107728559,LOC107669811 coding downstream 73411 5214328 ~ 5215407 (-)
AMCG00004835 rabgap1l,LOC107715121,LOC106613570,LOC106574055 coding downstream 130016 5154598 ~ 5158802 (-)
AMCG00004836 rabgap1l,LOC106574055,LOC106613570,LOC105011404 coding downstream 194606 5069255 ~ 5094212 (-)
AMCG00004832 nfia,LOC102782039 coding downstream 454518 4832401 ~ 4834300 (-)
AMCG00004840 NA coding upstream 54022 5345375 ~ 5359669 (-)
AMCG00004841 NA coding upstream 76311 5367664 ~ 5380508 (-)
AMCG00004844 nrd1a,nrdc,LOC106613566,LOC107738192,LOC105906141,LOC105011400 coding upstream 90800 5382153 ~ 5397343 (-)
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding upstream 108855 5400208 ~ 5412801 (-)
AMCG00004848 NA coding upstream 423597 5714950 ~ 5730640 (-)
G143544 NA non-coding downstream 271187 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 303124 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 430672 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 1097537 4187958 ~ 4191281 (-)
G143406 NA non-coding downstream 1179962 4107519 ~ 4108856 (-)
G143619 NA non-coding upstream 36362 5327715 ~ 5402341 (-)
G143759 NA non-coding upstream 1296798 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 1343367 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 1343705 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 1504580 6795933 ~ 6796223 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 1172404 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 2071589 3120229 ~ 3217229 (-)
G143145 NA other downstream 2578814 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 4642207 644004 ~ 646611 (-)
G142773 NA other downstream 5158115 127778 ~ 130703 (-)
G143659 NA other upstream 445456 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 3062636 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 3545007 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 3581532 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 6844025 12135378 ~ 12156378 (-)

Expression


Co-expression Network