AMCG00004848


Basic Information

Item Value
gene id AMCG00004848
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5714950 ~ 5730640 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004848
TTTTTAAACAGGCATTCGGAGACGCCTCCTCTCTGATGCGACATGTGAGACGGGAGGAAGAAGGCCCGAGTTTACGATTGAAGTCGGCGGTGGTAACGACAGTAAACTACATCCCATTTGGCATTTCGTAAGAATAAAGCTGGctaagagaattaaaaaataaagtacacacTAAAACATAGCATACACGGGTTTCGTACACAACCCCGTTGGTCTGAAATATAAAGTTGAGGTTTTTGCTCGGTATGTCACGGTTTAAAAGAGGTGGGAAATCTGTCGACTCTAGGGCTGGGTTTAAAAGTGATAAAGAGGAATCGCCTGTACCCTATGGCTTATTAAAAACGGCACGAAAAAGCGGACAGCTGAACCTGTCTGGACGAGGACTGACTGAAGTACCCCAAAGCGTGTGGCGATTGAATTTAGATACGCCTGAGGAAGCACAACAGAACCTCTCATTTGGAGGAGCGGATCGCTGGTGGGAACAAACTGATCTGACCAAGCTTCTCCTTTCATCAAACAAGCTGCAGGTTCTGTCGGAGGACATTCGGCTGTTGCCTGCTCTCATCTTTTTAGATGTCCATGACAATCAATTTACCTCCCTGCCCTCATCTATTGGAGAATTAGAAAATCTCCAGAAGCTTAATCTAAGCCACAATAAGCTGAAAGAGCTCCCGGAAGAGCTGTGGAATCTGAAGAACCTACGGAGCCTGCACCTCCAGCAGAATGAACTGGAACAGATCCCAGAAGGAGTGGGACGTCTTAGTAATCTGGATGATCTTGACCTCTCCAACAACCAGTTGACCACTATTCCAGAGAGCCTCGGCAACCTGAGAAGTCTAATCAAACTTAACTTGTCTTACAACAAACTGAAGTGCATTCCCCCAGGAATCCACTCCATGACAAGTTTGAAACTGTTAGACTGCACACACAACCAGTTGGAGAGTGTCCCTTCCAGCCTGGCCCAGATGGCCAGTTTAGAGCAACTCTACCTGAGACACAACAAACTCCGCTATCTTCCAGACTTCCCCTCCTGCAAGCTTCTCAAGGAGCTGCATGTTGGTTATAATCAGATTGAGGTGCTTGGACCAGAGCATCTTAAACACCTTAATTCTATTAGTGTGCTAGAGTTGAGAGACAATAAACTAAAAGCCTTGCCTGATGAAATTGCTCTGCTTGAAGGCCTGGAGAGACTGGAGCTCAGTAACAATGACATTAGCAGTCTGCCGTACGCTCTTGGTAACCTGCCCAAGCTGAAAATCTTGGCTCTGGAAGGAAACCCATTGAGGACTTTGCGCAGAGACCTTCTGACTAAAGGAACCCAGGAGCTTCTGAAATATTTAAGAAGTCGAGTTCAAGAACCAGATGGCCAATGTGGAGAGCGACACGAGACCGCTTTGACTCTTCCAAGTGAAGCCAAGATCAATGTGCATGCTATAAAGACACTGAAGACACTGGACTACAGTGAGAAACAGGAGGCATCAATCCCAGACGAATTGTTTGACACAGCTGTCGGTGATCCAGTTATCAGTGTGAACTTCAGTAAGAACCAGCTGGCTGCAGTCCCTGCCAGGCTTATAGAATTGAAGGCCACTGTTTCTGACATCAACCTGGGGTTCAATAAACTCACCGGCATCCCCCTGGAGTTCTGCATGTTACAGCAACTGGCACATATAGACCTCAGAAACAACCTTTTGACGTCCCTGCCTGCAGAACTGGAAGCCTTAGTAAAACTGAGGAGTATTATCTTGTCTTTTAACAGGTTTAAAACCTTCCCGGATGTGCTCTATCTGATCCCCACGCTGGAGACCATTCTAATCAGCAACAACCAGGTGGGAGTGATTGACCCGCATCAGCTGAAGCACCTGGAGAAGCTGTCCACGCTAGACCTGCAGAACAATGACATCATGCAGAGCGCTGATGCTCGATGGGAATCCATTCCGCAACCCAAGAGCAGCCATCGTTGCGAAAGGAACAGACGCGATACTTGAATATCTCCGAAGCAGAATTCCTGCCTAATCTACATGTTTCCCACCATTTCCAAATATTCTGGCATCCGAAACAAGCGGTATGATGATGTCGGAGAGCAGGTGGGGACGATACAAGCAGTAATGTTTCTCTACAGTCACTCAATGTATTAGTTAATTATCTGATAAATTGATGTGGATTATGCTCATTGTGTACAAAAGAACACAATGAGCATAATCCACAAGAAGGTCTAGCTTCTGGTCAAAGAAAATgacaggaaatgtttttatCTATGTGTATCAACGAATCTGTGTTGAAAATCACCTTGGATTAGACCCGTGTGAAATTATTGATcaaaaacagcttctgaaaTGAAGTCTTATGCAGTGTGTAATAGTTCTGTTTTACATTCCCATCTCTTTGGTATAACACTGAGCCTTACAAAAGATTTTATGTTGGAAAGAGTCAGTATTACGTTtataattgaatacaaaaacctcagaacaaaaaatgaatacaacgGGACATATAttctatatgtgtatgtatgtgtttgcacAAATAGACTCCCTTAAGGAGAAATACAAAGTGAACAAACAACTAAGAAACCTTACTTTTGTGTTATCTATCTGATGCTTGTAAGAACCCTCAATGAACTAGTTTACTTTTCTAACGTACTGGGTGAAAATGACTGACGGTCTAATTTATAACACTAACAGACTGAGACAAGggtctatttttgttttttgtggattttttaaataggtttagAAAATTGACATTGAAGCACATTTTTCTGCTGATTTACAATTCACTGCCACTTTTCTAGTTTTATCATTACTattttgtaatttcagttttttctatGTAATGAGGTTTGACATTCATTCTGTGGgccattttttatgttttcatatcaGAGATAAGATTTAAAactaatgaaacaaaaaggcTAGACCATATAGTTTGAAACTGAATGTACCACTTGTATCAAAGTAATACATGACTCCacttatattacattttgcaggTTTCACTACTGGTATCCGACTTTTCAAGCATGCAGTCTTTTGAgtattttgtgataattatcTGGAGTGATCAAATcataaaagtgtttaaaattaacatatAATGAAAGCACTGTGCAAATGTGTTTGTGCacttgaatttaaataattaaaagtttatCCATGGTTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004848 True 3167 mRNA 0.42 15 5714950 5730640

Neighbor

gene id symbol gene type direction distance location
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding downstream 302149 5400208 ~ 5412801 (-)
AMCG00004844 nrd1a,nrdc,LOC106613566,LOC107738192,LOC105906141,LOC105011400 coding downstream 317607 5382153 ~ 5397343 (-)
AMCG00004841 NA coding downstream 334442 5367664 ~ 5380508 (-)
AMCG00004840 NA coding downstream 355281 5345375 ~ 5359669 (-)
AMCG00004842 NA coding downstream 423597 5288818 ~ 5291353 (-)
AMCG00004853 NA coding upstream 179574 5910214 ~ 5914976 (-)
AMCG00004854 zranb2 coding upstream 186126 5916766 ~ 5939825 (-)
AMCG00004861 NA coding upstream 516349 6246989 ~ 6341878 (-)
AMCG00004858 NA coding upstream 771848 6502488 ~ 6509316 (-)
AMCG00004860 NA coding upstream 809551 6540191 ~ 6559350 (-)
G143619 NA non-coding downstream 312609 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 697319 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 729256 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 856804 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 1523669 4187958 ~ 4191281 (-)
G143759 NA non-coding upstream 857511 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 904080 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 904418 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 1065293 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 1875400 7606040 ~ 7666482 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 1598536 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 2497721 3120229 ~ 3217229 (-)
G143145 NA other downstream 3004946 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5068339 644004 ~ 646611 (-)
G142773 NA other downstream 5584247 127778 ~ 130703 (-)
G143659 NA other upstream 6169 5736809 ~ 5783184 (-)
G144050 selenof,LOC106598901 other upstream 2623349 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 3105720 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 3142245 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 6404738 12135378 ~ 12156378 (-)

Expression


Co-expression Network