AMCG00004852


Basic Information

Item Value
gene id AMCG00004852
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5800413 ~ 5816834 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004852
ATGGACCCCAGCAGCCAGAGCGACCCCTCCGCCGGGTTTCTGCCGCCCTTGCCCTCCTTCGCCACCCGGGCGATCCACGTCGGGCAGGAGCCGGAGCAGTGGCGCTGCATGGCCGTGGTGCCCCCCATCTCCCTGTCCACCACGTTTAAACAGAGCTCCCCGGGGGAGCATGCAGGCTTTGAGTACAGTCGTAGTGGAAACCCCACTCGGAATTGTCTAGAGAAAGCAGTTGCTGCTTTGGATGGAGCAAAATACAGTCTTGCCTTTGCTTCTGGGCTGGCTGCTACGATGACCATCACAAATATGCTGAAGGCCGGCGATGGTCTCGTTTGCATGAACGATGTTTACGGAGGGACAAACCGCTATTTCAAGCGCGTAGCCACACAGCAGGGCCTGGAGGTGTCGTTTGCAGACTGCACAAAACTGGAGGTCTTGAAGGCGGCTATTAAACCCAATACCAAGCTGGTCTGGGTTGAGACTCCCACAAATCCTACTATGAAAGTGGTGGATATTAAAGCCTGTGCAGATGCGATTCACCAAATCAACAAAGAAATCATTCTGGTGGTGGACAATACCTTCATCGACGTCGTGATGGGCCTAGTGTCCGTAGTTGATAACAGTCTGTACGAGCGACTGAAATTCTTGCAGAACGCCATTGGGGCAGTGCCATCTCCGTTTGACTGCTACCTGTGTAACCGGGGCCTGAAGACTCTCCACTTGAGAATGAAGCAGCATTTTAAGAACGCCATGGCCGTCGCCAAGTTCCTGGAAGCCGACCCGCGCGTTGAAAAAGTAATCTTCCCTGGCCTGCCATCGCACCCTCAGTTTGAGCTGATGAAACGCCAGTGCACCGGCTGCCCGGGAATGATCACCTTCTACATCAAAGGACAACTCAGTCATGCCAACGCTTTCCTGGGCAACTTGAAGGTGATTTCACTTCTGTTTTCCCTTCTTTCTCAAGCTGGAAGCAAGACAGTGTTGGCAGAGATGTATAAGCTCCAGTCTAAAATTGCCATCATGACTCACGCCTCGGTTCCTGGGAACGAGAGAGAAGAACTCGGCATTAGTGACACGCTAATTCGATTGTCTGTGGGTTTGGAAGACGAGGAAGATATTATTGAAGACCTGAAGCAGGCGCTGAGTGCAGCTCATCCTGgactgaaaaactaa

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K01758 CTH; cystathionine gamma-lyase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004852 True 1170 mRNA 0.53 10 5800413 5816834

Neighbor

gene id symbol gene type direction distance location
AMCG00004850 ankrd13c coding upstream 4020 5780974 ~ 5796393 (+)
AMCG00004849 NA coding upstream 56078 5743931 ~ 5744335 (+)
AMCG00004851 srsf11,LOC103035453,LOC105898987 coding upstream 59895 5730970 ~ 5740518 (+)
AMCG00004845 NA coding upstream 74203 5724587 ~ 5726210 (+)
AMCG00004847 NA coding upstream 92462 5657744 ~ 5707951 (+)
AMCG00004856 NA coding downstream 500067 6316901 ~ 6330455 (+)
AMCG00004855 NA coding downstream 709796 6526630 ~ 6535844 (+)
AMCG00004862 adgrl2 coding downstream 1351158 7167992 ~ 7178903 (+)
AMCG00004863 adgrl2 coding downstream 1373521 7190355 ~ 7219055 (+)
AMCG00004869 prkacb coding downstream 1831956 7648790 ~ 7666437 (+)
G143630 NA non-coding upstream 338559 5461492 ~ 5461854 (+)
G143526 NA non-coding upstream 942249 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 1548324 4251709 ~ 4252089 (+)
G143440 NA non-coding upstream 1561553 4218037 ~ 4238860 (+)
G143414 NA non-coding upstream 1666504 4133275 ~ 4133909 (+)
G143721 NA non-coding downstream 683402 6500236 ~ 6500721 (+)
G143772 NA non-coding downstream 818224 6635058 ~ 6635410 (+)
G143923 NA non-coding downstream 2056779 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 2161812 7978646 ~ 8049310 (+)
G143970 NA non-coding downstream 2192697 8009531 ~ 8012018 (+)
G143626 NA other upstream 376292 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 1428324 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 1690758 4109022 ~ 4109655 (+)
G143366 NA other upstream 1850576 3949426 ~ 3949837 (+)
AMCG00004793 NA other upstream 2405255 3377815 ~ 3395158 (+)
AMCG00004864 NA other downstream 1792067 7608901 ~ 7624070 (+)
AMCG00004868 samd13 other downstream 1855982 7672816 ~ 7692361 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 1901439 7718273 ~ 7734059 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 3883333 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 4131576 9948410 ~ 10015424 (+)

Expression


Co-expression Network