AMCG00004853


Basic Information

Item Value
gene id AMCG00004853
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5910214 ~ 5914976 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004853
ATGAGATGCGACCATGTGTGCGGGTCCCCGTCCTGCGCAACCATGATCTCTACCGACTGCGACCCTGTTGTCCCCTGGCCCAACGCGTCGGAGGAGGCAATGTGGGAGCCCAACATCTCCCAGTCTAGGCGTGAAGCCAACGCGTCCCAGAATGCCGCTTGCAGGTCGGTGTCGGTGGTGTTCCCCATCACCATGATGATCACGGGCATGGTGGGCAACGCGTTGGCGCTCCTGCTGGTCTACAGCTCCTATCGGAAGAGGGAGAACAAGAGGAAGAAGTCGTTCTTGCTGTGCATAGGATCCCTGGCGTTGACCGACCTGGTTGGGCAACTCCTGACCAGCCCCATTGTGATCTCCGTGTACAGGGCCGATCTCAAGTGGGAGCGCATCGACGCCTCCGGGAACCTGTGCTCCTTCTTCGGGGTGTGCATGACCGTGTTCGGGCTCTGTCCACTCTTCCTGGCCAGTGCCATGGCTGTGGAAAGGGCGTTGGCCATCACCAGTCCCCACTGGTACTCCAACAATATGAAAACCAGTCTGACCAAACTGGCGTTGTGTGTGATCTGGGGCGGCGTGCTCCTGTTTGCTGTCCTGCCTCTGTTGGGAGTTGGGCATTACACCTTGCAGTGGCCGGGGACTTGGTGCTTCATCAGCACTGGGGACAGAAACATCTCCGGCAACGTTTTCTTTTCCACCACATTTGCGGTGCTGGGCATCTTATCCTTGCTGGTGACTTTCTCCTGCAATGTGGTGACCATCAAGTCCCTGGTGAGCCGCTGTAAGGCCAAGACAGCCTCGTCCCAGTCGGGCAGGCAGTGGGAGAGGCTGACGGCGGAGACGGTCATCCAGCTGATGGGCATCATGTGTGTGCTTTTCACCTGCTGGTCCCCTTTACTGGTCATGATGCTGAAAATGATCTCGACACACACCTCTTCCCACCAGTGCCAACCAGAAGCTGACAGGCTATTACCCAGTCGATATCCAGCAGAAATCCAGGTGGATTGCAATTTCTATCTCACCGCCATACGTCTGGCCTCCCTCAACCAGATTCTGGATCCTTGGGTTTACTTACTGTTGAGGGAAATACTTCTCCGGAAGTTCTGTCAGGTGGCCAATGCTGTCTCTAACTGCTCCATCGATGGACAGAAAGGGACTCAGAGTGCTGCTGATGGACTGAACAAGCAAAACATTGACGCCAGCCTCATACAAAAGCAGTGA

Function

GO: NA

KEGG:

id description
K04260 PTGER3; prostaglandin E receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004853 True 1218 mRNA 0.56 2 5910214 5914976

Neighbor

gene id symbol gene type direction distance location
AMCG00004848 NA coding downstream 179574 5714950 ~ 5730640 (-)
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding downstream 497413 5400208 ~ 5412801 (-)
AMCG00004844 nrd1a,nrdc,LOC106613566,LOC107738192,LOC105906141,LOC105011400 coding downstream 512871 5382153 ~ 5397343 (-)
AMCG00004841 NA coding downstream 529706 5367664 ~ 5380508 (-)
AMCG00004840 NA coding downstream 550545 5345375 ~ 5359669 (-)
AMCG00004854 zranb2 coding upstream 1790 5916766 ~ 5939825 (-)
AMCG00004861 NA coding upstream 332013 6246989 ~ 6341878 (-)
AMCG00004858 NA coding upstream 587512 6502488 ~ 6509316 (-)
AMCG00004860 NA coding upstream 625215 6540191 ~ 6559350 (-)
AMCG00004859 NA coding upstream 649363 6564339 ~ 6580002 (-)
G143619 NA non-coding downstream 507873 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 892583 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 924520 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 1052068 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 1718933 4187958 ~ 4191281 (-)
G143759 NA non-coding upstream 673175 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 719744 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 720082 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 880957 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 1691064 7606040 ~ 7666482 (-)
G143659 NA other downstream 127030 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 1793800 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 2692985 3120229 ~ 3217229 (-)
G143145 NA other downstream 3200210 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5263603 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 2439013 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 2921384 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 2957909 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 6220402 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 6429695 12344671 ~ 12348328 (-)

Expression


Co-expression Network