AMCG00004854 (zranb2)


Basic Information

Item Value
gene id AMCG00004854
gene name zranb2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 5916766 ~ 5939825 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004854
ATGCCCTACGAAAAAACTACTGAAGCTAAGATGATGAAAGCTGGGGGGACAGAAATTGGCAAGACTCTTGCTGAAAAGAGTCGAGGCCTCTTCAGTGCCAATGACTGGCAGTGCAAGACCTGCGGTAATGTGAACTGGGCCCGAAGGTCCGAGTGTAATATGTGCAACACTCCCAAATACGCAAAGCTGGAAGAAAGAACAGGATATGGAGGAGGatttaatgagagagagaatgtggaATATATTGAGCGTGAAGAATCTGATGGAGAATACGATGAGTTTGGccgtaaaaagaaaaaataccgTGGGAAGAGTGGCAGTGCTACGTCCCTCCTGAAGGACAACGAGAAGAAAGTGGTTGCAGAGGAGAATGACGAGGATGAGGAAGATGAAGATGAGGAGGGTGAGGAAGATGACGAAGGAGCTGATCTCTCCAAGTACGACCTGGACGCCAGTGACGAAGAAGCTGCAAAGCCAGTGGCTAAAAAGACCAGCGGCTCGGGCTCGTCCCGTTCACGCTCGTCCTCTCGCTCCTCTCGCTCCAGCTCGCGGTCCAGGTCCAGGTCCCGCTCACGAAGTTCCTCAAGCTCCAGATCAAGGACTCGCTCGAGCTCCCGAGATCGTGCGCGCTCACGCAGGTCGAGATCCAGATCCAGCTCCAGGTCTCGTAAGGGGTCTACGTCTCCGAGGAAAAGGTCTCGATCGAGCTCGTCTTCCTCCTCCCCTGAGAGAGCCAAGAAGAGGAGCCGCTCACGATCTTCCTCCTCTggcgagagaaaaaaaagacgTTCGAGGTCTCGATCGTCAGAAAGACGCCGCGGATCATCCTCTGGCTCCTCCCACTCCGGCTCCCAGTCGTCAAGTTCCAAAAAGAAATAAGTTCAAACAGGCGTTTTTAAAACCAGTAGATTTAAGACAAAGTGCATGGTGTGTTTTAAAGATACAAATGAGTTGTTGATGCTGTTTATTTCTCAACCGTCTGCCCTGGCGGTACGTGCTGACTATACTTTCCAGCCCCAGAAGTGGCATGTCTGTCCTCGCTCTTAGAAACCGCtgcttgttttcctgttttccgTACATGCAGTCATGTTTTAAGCCATAAGTTTCCTCCGGTTGTTTCTAAGGAACTTTATTCTTTCCCCGTTTTCACCGCCTCAAAAAATGCCCACCTCCTCCCTCATagtaaagcagtttaaaaatgagCATGCTGTTCCGTGTTGCCTACACGATGAGATCTGTTTCGCCTTTATATTTCCATAAGCAATAAGGAAGTTAATATCagactttttttaattggttgtaACCAGAATTCAAACTATCTGCTTAGTGAGTGTACAATACACTTCAAATCTCATGCAAATATAAGGCTGTATTCACCCAATTTTAGTTGTTTTGCAGCCTTATCATGCTTGTGGTGACTTGCATGCAAATTTTGCCCTCGTCATCATTAAAATACTTGCTTCAAATCTTAACCTGCAAGGattgttttgacatttcttttatttactgaattttgtttaattgacataatgtttgagtatttttaaggtaagtattttttttatttacttttgaattattGCTTCTATTGTTAGGtaactatatatacaaaaatactgtGAAGCTTTCTTTTGCAGTTGCACAACTATAAAACTCGGTAATTGAATGCAACAAcacattattatgtatattgtaatgaaattattgtattttgggaGTAGGTAGCAGGCCTCTATagttgtttaaatgcaaataaatggtAGTAGAATTGATATTGAACTAAGGAAGTCTGTGTTTTAAGaattggatatatatatatatatttttttttagcctGTAGTTAAGAGGAAAAAGCCAGAACACTTTCTGCGCAGaggttatttaattttgttcatgCCCCCTCGtccccttctttttttttaaactacagtattactgtattttgtgttcagACTACgctaattaaattacatatctaagcttttttttcctgaatgaCAGCAGTAACAAAATCAGGTTTAACTTTTTTCAGTTCATCAAAAAAAATGGcattgtaaacaaaatgtaaataaaatctgtcagcAACCTTGA

Function

symbol description
zranb2 Enables lipid antigen binding activity and lipopolysaccharide binding activity. Acts upstream of or within defense response to bacterium. Predicted to be located in nucleus. Is expressed in several structures, including anterior neural tube; blastoderm; blastodisc; integument; and pleuroperitoneal region. Orthologous to human ZRANB2 (zinc finger RANBP2-type containing 2).

NR:

description
PREDICTED: zinc finger Ran-binding domain-containing protein 2 isoform X2

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004854 True 2091 mRNA 0.42 9 5916766 5939825

Neighbor

gene id symbol gene type direction distance location
AMCG00004853 NA coding downstream 1790 5910214 ~ 5914976 (-)
AMCG00004848 NA coding downstream 186126 5714950 ~ 5730640 (-)
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding downstream 503965 5400208 ~ 5412801 (-)
AMCG00004844 nrd1a,nrdc,LOC106613566,LOC107738192,LOC105906141,LOC105011400 coding downstream 519423 5382153 ~ 5397343 (-)
AMCG00004841 NA coding downstream 536258 5367664 ~ 5380508 (-)
AMCG00004861 NA coding upstream 307164 6246989 ~ 6341878 (-)
AMCG00004858 NA coding upstream 562663 6502488 ~ 6509316 (-)
AMCG00004860 NA coding upstream 600366 6540191 ~ 6559350 (-)
AMCG00004859 NA coding upstream 624514 6564339 ~ 6580002 (-)
AMCG00004857 NA coding upstream 650395 6590220 ~ 6609157 (-)
G143619 NA non-coding downstream 514425 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 899135 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 931072 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 1058620 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 1725485 4187958 ~ 4191281 (-)
G143759 NA non-coding upstream 648326 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 694895 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 695233 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 856108 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 1666215 7606040 ~ 7666482 (-)
G143659 NA other downstream 133582 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 1800352 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 2699537 3120229 ~ 3217229 (-)
G143145 NA other downstream 3206762 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5270155 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 2414164 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 2896535 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 2933060 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 6195553 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 6404846 12344671 ~ 12348328 (-)

Expression


Co-expression Network