AMCG00004857


Basic Information

Item Value
gene id AMCG00004857
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6590220 ~ 6609157 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004857
ATGTCAACCCCACAGAATCTTGCTGGTGCACTGCCACATCTGCATTCTTCAAACTCGTTTAACACGCTTGTATTCATTTCCATCGCAGATATCGATGAATGCAAGAATTCTACAATCTGTGGCACCTTCTCAAAATGCCACAACACAATTGGATCATTTTACTGCAGTTGCCAAAGAGATTATTTACCATCCTCCGGAAAGTTACAGTTTCACCCGGATGACGGGACTCAATGTGAAGAGAGTGCAAAGAAAAACTGTCACACAAACAGCACATGTGTGTTGGGAAGCATTAACAAAACACTTGAACATATCAGAAGCATTAAAGACCCATGGAATATGTTGGAAGAGATAAGAAATCAAACTTCAGGAGAACTGTCACCTGTTGATGTGATTACATATGTGGAGGTCTTAACTCGATCGGCTGCATCATTAAGTGTTATGAATGACACTGTCACAGACAAGGAGGCACTTACTAATGCTACTATCAATGAGTTTGTAAAAACAGTAAACAATCTTGTTGAAATGGATGAACTGGTGGCCTGGAACAGGATTGATACGGAGAACAGAAAAAAGAGCATTACAAAACTGCTGCACACTGTGGAAGAAGCAACACTGGGTATCTCTCAAAATTTCAAAACGACAACTGAGATGGAAGTCCATGCAAGCAACGTGGCTCTTAAATTGTATGCCTTTGATCCCCAACAAGGAAGACACATTCATCCACATGCTAACATGAATGGGGATGTTATAGCACTAATTCCAAAACATCATAAAGACACTTATGGGAGTGTATCCATTGTGTTTCTACGATATGACAGCATTGGTATTCTCCTGAAACCAAATGATATCTCCGTGGAAACAAATGACTCGCAGGCTGATGAAGCTGAGGATTTTACTGTGAACTCACAAGTAATGGCTGCAGCGATAAAGACGAACCCACCTCAGATCTACCAGCTTGATCGGGTTACATTTACTCTTAAACATATCAAGCTGCTCACCCCGGATTCGGtcacaaaatgtgctttttggAAATACTCTCCACCTAGCATGAAAGGTCATTGGTCCACAGAAGGCTGTGAACGCACGCATGTCAATGTTTCCCATACTGGATGTCGCTGTGATCATCTGACTCATTTTGCCATTCTTATGTCTTCTGGACGGGCTAATATGGAAGACCATTATAGCATACTCACCAGAATCACATTGCTAGGGATAATAATATCCCTCATCTGCCtgtcaatAGAAATACAGAGCACCAGGACCACGATTCATAAAAACCTTTGCTGTAGTTTGTTCATGGCAGAATTCATTTTCCTGATAGGAATTAATATGAACACCCACAAGGTATTCTGTTCCGTCATCGCCGGGttactacattattttttcttagctGCTTTTGCCTGGATGTGTATTGAAGGGATCCATCTTTATTTAATAGTGGTTGGTGTCATATACAATAAAGGTTTCCTGCACCGCAACTTCTACATTTTCGGGTACGGAAGCCCTGCTGTCGTAGTAGGAATTTCGGCGACACTTGGCTACAAATATTACGGCACCAATAAAATGTGCTGGTTAAGCACAGAAAATAACTTTATATGGAGCTTCATTGGACCTGCTTGTTTAATTATTCTGGTTAATCTCTTGGCTTTTGGAGTGATCCTTTACAAAGTCTATCGACATACAGCTGTGAAAAAACCTGAAGTCAgtcattatgaaaatataagGTCCTGTGCGAGGGGTGCCCTGGCTCTTTTGTTTGTACTCGGTGCGACCTGGGCGTTTGGTGTCCTCCACATCTTAATCGAATCCACACTCACAGCGTATCTCTTCACAATCACCAACACTTTTCAAGGGATGTTCATCTTCATATTCCTGTGTGTGTTATCCAGAAAGATTCAAGAAGAGTACTACCGATTGTTCAAGAATGTGCCGTGTTGTTTTGAGTGTctcagataaataaatgaagaaatggaagtggagaaaaagaaaaagacgaACGGCGCATGTTTCATCAAGGAATCAAAAGTGAccggtacacacacacaagccattTCTTATCAGTAGCGCCCTGCATTTTGCAtgactgaagaaaaacatataaaatggaGTCATGCAAAATGATAGAGCCTATTTATCAGTACAACACCAGTGACACCATTTTGACAAAACATCTAGGAGAACAATAGTGCAAACgatttttcagtgtgttttttctttaggGCTTTTCTTCCATTTGACTATGTAGCGGCAATTATGCCctgaccatttaaaataaatatgttgttgttttgctataatttaatttaaattaagtattgtgCTTAAGAatcatgtattaaaatatattcaatagtTGGCTCCATATGCCTATGTAACCGTAAGAGAGTTTAGTACTATACATGTAAATACTGCATAGGACTGGTGCACAAGCTGGGGCACAAACGTTAATGACCAATGGGCTTGGGATGACGGACACAAATctaaactaaatgtattttataggcCATAGACCCAGATGTGATTGTAATGACTACTGGATTGCTTTTAATACAATGGATTTAgtaatattaaaacaagaaaactgtcTCTGTAGAGCACCTGACCTCTTATACAATTCTGTACATTACCAGCCAAGGGAGATTTGTCCCATAACTTTGGGTAATGGGCTCTaagctttgaaatgaaaataactttGTGAGTAGTAGGagaaatatttaatcattagAAGTGGCCTCTgctctataaaaaaatatataatatacaaatctCTAAAGGAGAcatcttaaatgtattattttcctccCACCCCTCCTTCACcattttttatgatgatgataaccAGTGCATTACACAACTTCAGTATTACTCTTTCCATATGTCTGACACATTACAGCATTTCAAATCTGAGTGAGATCAGAGGGCAGGGTGAACCACAGTAGTATACTCCTACCTTTTGCAATTTAAGTTCACTTGTCTTCCCACTGCATAGTTTCTGCATGGATAGTCTTAAATGTGTTTCCAGAGACGTCTAGGACCTTCTAAATTAATCTGTGGTTTGATATTACCTCCAGTGGAACTAGACACTGGGAAGGGAACCTGTCAGTGGGAGACTCCCAACACTAACATTTTGCATACTTtacatttcattcatttaaagagTGAATGGGGATCTCAGTCATTACAAAAACTGTGCTTGGGAAATCCTTTGCACTTCACTAGCCACCGTCTCCCGTATTCTTTAAGTCGGTGTACTGCTATCTTATTTATATGGTTTCCCCATTTTTCATAAAGTCTACTTCAAAAGGTTTCAGATCTTattacagtaaagaaaaaagaaaaaacttaatTGTTACTATATGTTggatcaaaatgaaaacaaacaaacccaccCTTAAGAAGATTGCCAtccttaaaacaaacacaaatcaatgaagcacaatgtattttttctgggTATACAATCATTTTGGATCATTGCAAAAGTAAGAAATTAATGCTTTATTTCAAGAGATACATATTCTCTCTTGCCATTCTCTTATGTCTGtcaaacttaattatttatgatCCTATATATAATGCAACTCTGTAAAGAAGCCTCTTTAGACTAGTGTTTGTCTCTACCACACCGCAAATTAAATTCTGTAatttaatgcaaacaaataacATCCATTGTAAGTTTCACTCGATCATTTTGCTCCAGAAATGTATCAAGGTGCTCTTTAAAGAGTTTTGCTCCAGAACAAATTTTGCTCATAAGTTGCCTGAAGGGGTTATAAATGGTGCCAATCCTTTCACACAACATCgatgttaaaaaaactaaaacaaatgagcattaatttaaacatttgaaaccCATTATAGGTCTGCTGCAAGATTactattttacaaaatatgagTAAGTTACAGCAAtaacatggtttatttttgggAGGTTGTAATAATTGAGCAAATTTTGCACTAGAGCAAAAAGCTGGAATCAtcctgtatgttttgtttaattatgtaaatgtatgtacatgtaaataaactaaaaagcacagtcaaattaaaatgatgcagCAATCCATCTAtaacaggggtgtcagactccagtcttgggggggccacagtgtctgctggtttttgttccaacaggagatcccaattacttattttatgtcatTACTGtctcaggtaggcttatctaaa

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04595 ADGRL4, ELTD1; adhesion G protein-coupled receptor L4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004857 True 4188 mRNA 0.38 14 6590220 6609157

Neighbor

gene id symbol gene type direction distance location
AMCG00004859 NA coding downstream 10218 6564339 ~ 6580002 (-)
AMCG00004860 NA coding downstream 30870 6540191 ~ 6559350 (-)
AMCG00004858 NA coding downstream 80904 6502488 ~ 6509316 (-)
AMCG00004861 NA coding downstream 248342 6246989 ~ 6341878 (-)
AMCG00004854 zranb2 coding downstream 650395 5916766 ~ 5939825 (-)
AMCG00004866 NA coding upstream 927573 7536730 ~ 7562285 (-)
AMCG00004865 ttll7 coding upstream 964034 7573191 ~ 7582511 (-)
AMCG00004875 asf1b,as1la coding upstream 1005196 7614353 ~ 7616498 (-)
AMCG00004872 NA coding upstream 1079869 7689026 ~ 7699315 (-)
AMCG00004873 NA coding upstream 1124740 7733897 ~ 7741545 (-)
G143759 NA non-coding downstream 1474 6588151 ~ 6588746 (-)
G143619 NA non-coding downstream 1187879 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 1572589 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 1604526 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 1732074 4791690 ~ 4858146 (-)
G143771 NA non-coding upstream 25563 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 25901 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 186776 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 996883 7606040 ~ 7666482 (-)
G143839 NA non-coding upstream 1012009 7621166 ~ 7624705 (-)
G143659 NA other downstream 807036 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 2473806 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 3372991 3120229 ~ 3217229 (-)
G143145 NA other downstream 3880216 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5943609 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 1744832 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 2227203 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 2263728 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 5526221 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 5735514 12344671 ~ 12348328 (-)

Expression


Co-expression Network