AMCG00004858


Basic Information

Item Value
gene id AMCG00004858
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6502488 ~ 6509316 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004858
atgaagaagcgGAAGGAGCTCAACGCGTTAATCGGGCTCGGCGGGGAGAGCAAGAGGAAGAAGACCAAGAAGGGCTCGGGACACCGGCTCCTGCGCACCGAGCCGCCCGATTCGGACTCCGAGTCCAGTTCGGAGGATGACGAGTTCGGCCACCTGAGCGCCGCCTCCGCGCTGGGGAAGAGAACATATGCACAGTGCTGCAACATCTGCTACCCTTTGTGTGCATTCATCATCCTGGCTGCTTGCGTGGTGGCCTGCGCTGGTTTAATATGGATGCAGATCGCCCTGAAGGAAGATCTAGATGCTCTGAAGGAAAAGCTGCGTACAATGGAGTCCAGCCAAAAAGTATCAGCCCACGAGATCCCCAAACTCAGCGAGGACTTACTAGACAAACAGAAGAAgcttgaaaatattgaaaatggaGATAAGGGGCTGAGTAAAGTGTGGTCaaacataacagaaataaacaaaaagATCAGTTTGCTTGATTCTGCTGTCAGCCACCTGAAAGCAAACATAAAATCGGCTTCTGATTTGATCAATCTTCCCACCACAGTTGAAGAGCTTCAAAAGAGTGTTGCCACAATCGGGAGCACGTTAACAAGTGTGCAGCATGACGTTGAGACAATGCAGACCGCGCTCGACGAGCAGAAGAAAACGGTGATTGCAGTTAGAAAAAACATGgaTGAGAAACAGGATCGtgaaagtaaagaaacaaacaaatcgtCTTCTCCCACTTCCACAGAACAACCACCAGCCGATAACCGGACATCATGTTTAATACTCAAACAGGAAATGCTGTATCTCCAAGATGCGATTAGTGAGCTGAACGCCACCCAGGTGCTTTACCAATCGCACAACGACGAGCAGGTGCACAGCATGAACGCAACCATTGGCGGCCTCAAGCAGAGGATGTTTTCACTGGAAAATGAGTTCCTCAGCTTTAACGTTACACGAGCCCCTCGGCACAACATGAGTACAATGGACTCTCGAACCGAGGAGCTGAGAGAAAAGCTTCAGTTGATCAATGCCCTGACTAGTAAACCACAGAGCGAGGTGCATCCAGGGGAAACGGATCAGGAACCAGAACTGAAGCCGGCCTCTGGTGAACCTGGACCTGCAGGAATAAATCCAGAGCACGTCTTGGCCAGTTCTGAGATAACACCAGACCAAGGACTGCCTCCAGATAGTGCCAAAGCCCCCGACGGCGACCACTTTAAGGACCATAGAGAAACAGACAATCAACACCTCAATGGAAGCGAAACGCCACCAGACACTGACCGCATCAGTGACAGTAATGTGGAAAAAACGGTCAAAGGCTTTCCAGCTGCCCAGGAAATCTTTCCACCAGAAGttgttaaaaaaactgaaactggaaaatcacctcttccttctataAAGGATGGCTCTTCACAGACCTCAAATTCTACCAGACTTCCAAGATTTCTATCACATGTTCTCTCCAATAAAGAAACGGGAAGACCCTTATCCTTGCCAGGAATCGGAAGTTTAAAAGATCTACAGGAGTTCTTCCTTGGATTGGGAGAAGGTTCTTCTGAAGGGCTCTCTTACGATGAACTGAAGAAGCATTTTGGATTTTCAACGCCTGACATTCGTGAACTGGAGAGTTACGATGTTGACAAAAATCAGAAATACTCGCAGGCTGAGCTCCAGGCTGCCACAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004858 True 1686 mRNA 0.49 10 6502488 6509316

Neighbor

gene id symbol gene type direction distance location
AMCG00004861 NA coding downstream 160610 6246989 ~ 6341878 (-)
AMCG00004854 zranb2 coding downstream 562663 5916766 ~ 5939825 (-)
AMCG00004853 NA coding downstream 587512 5910214 ~ 5914976 (-)
AMCG00004848 NA coding downstream 771848 5714950 ~ 5730640 (-)
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding downstream 1089687 5400208 ~ 5412801 (-)
AMCG00004860 NA coding upstream 30875 6540191 ~ 6559350 (-)
AMCG00004859 NA coding upstream 55023 6564339 ~ 6580002 (-)
AMCG00004857 NA coding upstream 80904 6590220 ~ 6609157 (-)
AMCG00004866 NA coding upstream 1027414 7536730 ~ 7562285 (-)
AMCG00004865 ttll7 coding upstream 1063875 7573191 ~ 7582511 (-)
G143619 NA non-coding downstream 1100147 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 1484857 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 1516794 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 1644342 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 2311207 4187958 ~ 4191281 (-)
G143759 NA non-coding upstream 78835 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 125404 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 125742 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 286617 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 1096724 7606040 ~ 7666482 (-)
G143659 NA other downstream 719304 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 2386074 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 3285259 3120229 ~ 3217229 (-)
G143145 NA other downstream 3792484 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5855877 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 1844673 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 2327044 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 2363569 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 5626062 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 5835355 12344671 ~ 12348328 (-)

Expression


Co-expression Network