AMCG00004859


Basic Information

Item Value
gene id AMCG00004859
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6564339 ~ 6580002 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004859
CACTGACTGAAGCCATCATGAAGTGGTTTCTATTGTTAGTGTGGTTATCTTCAGTGGgctGTGACACAATCAATCTTGagcccagatTCAGCTTCAAAAAAACCTATGAATACAAGTATGAAGGAATTATAAAGATTAGGCACACTGAAAGGAACTTGGTGGAATCAGGCCTGAAAATTACATGTGGACTGGAAATCAATGCAATCGGGAAGGATCTGTTCCTTCTCAAGGTTAAAAATCTGGTCTTCCAAGAATATAATGGTCTCCCTGGGAAGAGCGCATTTTATGCTTCGCCAAAGCTAACCCAGAAACTGGCAACCCAACTCACACAACCCATGAAGTTTGAATACAGTAGAGGCCGCATTGGTGACATATTTGCAGTGTCCGACGTCTCTGACGCAGCCATCAACATCGTGAGAGGGATTCTCAGTGTCCTGGATATCACCGCCAAGAACAACGCACCTATCTATGAAATGTATGAGAATGGAATTCATGGAAAATGCTATACCTACTATACCAtcctgaaagacaaaaaaacagacaatatCAACATCACTCGATCTACAGACTTAAACAACTGCCTGCACAAGGTAGAAAAGTACCTGGGGATGGCTCATGCCCAAGactgcaaacattttaaagagAGTGGCTCAAATCGTAAAGACGTTATCAGATACAGCTATGCCCTGAAGGCTGCTGAAGATGGTTCTGtgataacaaatgcagatgtacAAGAGATTCAGCAGTTCACACCATTCAGTGTGAAAGATGGGGCTTCTATACTGGAGGCAACaaaaatgcTTGCACTGTTGAGTGTGAAGGACAACCAGGAGAAACCACCTACTATCTTACTGGCAAACAGAGGGAGCTTGACGTACGCATTCGGagtcaaattaaatcagttccCAACAATGATCACGAAATTAGAGAACCCAGTGGATGAGCGTTTGGTGATGGCAAACACCAAACAGATTGATGTTAACTCTACCACAGATGTCCTCAGACTATACCAAATGCTAAATCTGGCCACGATTGAAAACCTTGAGTCTCtatggaaaatattttctgGAGACCAAAACAAGagGAGGTGGCTTTTGGACTCCATCCAGGCAATTTCAGACACTAAGGTTATCATATTCATAAAAAAGAGAATTCAGAATCAGGATATTACATGGGGTGAAGCCAGCCAAGTATTGATGGTAGTACTCAATAAAATGACAGCTGATCACGAAGCTGTAGAACAATCTAAGGAATTTCTGAGAATCCCATTTATAAAGGATCAGATAGTCCTTTGGAGGACAGTGATGCTTGGTTATGGATCACTGGTTTACAGGTACTGCTCTTATTTTGAGGATTGTCCTGAAGATGTTCTTGagCCTCTCCATGAGTTTGCCAATAACGCACTCAATGAAGCCAATCAAGCGAACATGGTTCTGGCACTGAAGGCCATAGGGAATGCAGGACAGCCCTCTAGCATTAAGACCATCAAGAAATTCTTGCCTGGATATGACGAGAAGGCTACAAAGCTTCCTCTCTTACTTCAACATAATGCTGTGTTGGCTCTGAGGAACATTGCTGTTAAAGACCCCAGGAGAGTTCAAGACATAGCATTGAGAATCTTTATGGATGATGATCATCAAGCTGAAGTCCGGATCTATGcttgtttaattctgtttgaAACAAGTCCTTCTATGGCTCTTGTTTCAACAATATCAGCATATCTCCTAAAGGAGAAGAACCTACAAGTGGCCAGTTTCTGTTATTCACAGATTTATGCTATTTCAAGATCCACCACCCCTGATAACAAGGAAGCgtcaATTGCTTGCAGTGTAGCTGTCAAGATTCTGAAGCCCAAATTTGATCACCTTAGCTATCGTTACAGCAAAGCTTTCCACTTCGATATGTTTAATGAACGCATTTTGACTGGAATGTCTGCTGACCTTTATATGGTTAATAATCCTGGCAATTATCTACCAACTGCTCTTATTACCCGATTCAAAGCCTATTCTATTTGGAAGAAAATACAGCCAATTGAGttGGCTGAATGGAgtacatttccaaaagataaACCTCTTGCCTCTGGCTATGTGAAAATCTTGGGTCAGGAGGTCTTTTTCGGAAGCATCAACAAAAATATGATTGAGACAATGGCTACAATGGCAGGAAAAAATGGCAAAGCATTTACAACAATTGCAGATCTTCAACGTGGAATGGCATTTGATTGGACATCGCCATTTTTAGTTGCTGAAACCCGATACATACAACCCACCTGCCTTGGGCTTCCAGCTGAAATTAGCAAGAGCTACTTTTCTATTTTGGGTATAAAAGTTAATGcaaaagcaaaattaaaccCAGCCCCAACAGATAACTTAACCGAGTTGATAAAAGCAGACATTGAACTTCAGGTGGATGGCGCTATAAGGGTCGTCAAAGATTTGTATTGTTATCATGGAATTAATACAGAATGGTTACAGTCTGGAGCTGAATTGTATTCAAAAGCTACAACCGTTTTGCCACTGAACTTTAAACTGAAGATGAATATGCAGAAAAGGAAAATTGAGATTGATACTCCCCCATGtcagaaggaaaatgaaatattttatgtCGGCACTGAACTTTTTGCTGTCTCAAGAAATATTGAAGACGTCTCTGAAAAAAAGACTCCCATGATGCCTTTGAATGAGGTTTTTGAAGAAATACCCTCTAACAAACCTGCAAAGTTTCAAAGCACTTCATCCAAAGATGagaaatcatcatcatcatactgGAGAGGGTATACAAAGATATACCAAGAAGACACCAACATCTGTGTTGCAGCAAACAACTTTGGGATGGAAGTCTGTATGGAAACAAATGCAAGATCTGCACACAATGTCAATAACTGCTTCCTTTATTACCTAACAGGAAGCacttacattaaaattaaactcaaaccagGACATCGCGATGCAGGCAGCTCTTCATCcgagtccagctcctccagttCCTCCGCAAGAGGGAAGAGACGAGGCTCGGGAAGACCAGCGTGGAGCAGCAGCAAGGTCCTGAGCGTTGGCAGGAACAGCAGTGAGTCCTCCAGCTCATCCTCACAGTCACAGtCCAGATTTGCTGAAAATAGTACAAAGCCTGCTGTTACTTTCAAAGCTGttgcagaggggaaaaaaacacggGGCTACGAAGGAGCTATATATTACGTGAGGAAAAGCATTCAACTTTTGATCTCTGAGGTTACTGATGGAAGCAAATGGAAGATGTGCACAGATACTGAGCTGGATATGCAGTCCTGGAGAACAATGATGCAGGTCAGATGGGGAAACGATTGTACACAATACAAGATGGCTGTTCAGACTGCAATTGATTACAACACTCACAAGGAATTTCTAATTAATTCTATATTGCAATGGGAGGATGTACCAGAGTATATGAAACAAACTGGAACAAGCATTAATGATTACATCCCTGGAATGGCTTTTCTGCTGGGTttttatcaaaagcaaaaccaaaatcCCACATCTCAAGTTTCTGTTACACTTGTAGAAGTATCATctacaaatatgaatattatgatGAACACTCCTGAGcgaACAGTGTACCAATATGATATCCCATTACCATTCCAAATTCCTTATCTAAACAGTAATACTCCACAAATTCAAATGATTCGAGACATGCAGGGATTGAAAGACGAGTGCTCGGTTGAAGGAAATAACTTCAAAACTTTTAATGACATCAAGTTCACCTCTCCAATGCCCAAAGCATGTTACCATGTGTTAGCTCAAGACTGCACAAGTGACATGAAGTTCCTGGTTATGATGAAACAAGAGGCTTCCAGTAAGAAAGAAATTCACATCAGAACACCTTCTGGATCTCTGTACATGTACCGTAAAGATGCAGGAGACTTTGTCCTCACGCTGAACAATTCGTCAGTGCTGATGTCTGCCTTGCCATTAAAAGACGTATCAGGAGAACTGCTTATCAGCAAACTTGGAGACAGTGTCCTTCTACAAGCACCAACATTTGGACTTGACAGCTTACATTTCGATGGAGAGGCAGTGAAGCGCCAGCCAGTGAAGCTGGACAGAGAAGTCAACTTGCTTGGAACAAAGTCCAAATGTTATTCAGTTCAGCCCGTGCTGCGCTGCAGACCTGGGTGCTCAGCAGAAGTCACCATCCCCGTCTCTGTCGGATTCCACTGCGTTCCTCTTGATACCAGTGTGAGTGAGAAGGACGTCCAGACCATGTTTGATCAGAAGGCTGAGCATGTGGAAGGAACCATGGAGGCCCACACTGCTTGCTCTTGCAGTGGTGCTGAATGTCCTTAGGCCTCCAATGATCTTGGGATTGTTACCTATACTCTACAAGATATTAAAAAGTGTattggggaaaaatatataaattaatgagcattaataaaacaaactatcGTATCTCACTTGTTGACAGTGTTTTTCTCCAAAAGTGATACATTCTATGAGTATTATTTGCCTTAAAAACCTCAGACCAAGCAAGCAATCTGTcgtatttttggggggtttgtggGATATGCCAAGGTAATTTTCCCTTTGAGAGAGGTGGAGTAAAAAGGAATTCCTAACACTATGGATAACTTGATAACTTGCTGCTAACAGTAAGCATGGGCACAATTCCTTTTTGAACACACGTGTACAGTATGAATTGCATTgacattgaattaaatatatcaaaaga

Function

GO:

id name namespace
GO:0071391 cellular response to estrogen stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004859 True 4707 mRNA 0.41 30 6564339 6580002

Neighbor

gene id symbol gene type direction distance location
AMCG00004860 NA coding downstream 4989 6540191 ~ 6559350 (-)
AMCG00004858 NA coding downstream 55023 6502488 ~ 6509316 (-)
AMCG00004861 NA coding downstream 222461 6246989 ~ 6341878 (-)
AMCG00004854 zranb2 coding downstream 624514 5916766 ~ 5939825 (-)
AMCG00004853 NA coding downstream 649363 5910214 ~ 5914976 (-)
AMCG00004857 NA coding upstream 10218 6590220 ~ 6609157 (-)
AMCG00004866 NA coding upstream 956728 7536730 ~ 7562285 (-)
AMCG00004865 ttll7 coding upstream 993189 7573191 ~ 7582511 (-)
AMCG00004875 asf1b,as1la coding upstream 1034351 7614353 ~ 7616498 (-)
AMCG00004872 NA coding upstream 1109024 7689026 ~ 7699315 (-)
G143619 NA non-coding downstream 1161998 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 1546708 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 1578645 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 1706193 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 2373058 4187958 ~ 4191281 (-)
G143759 NA non-coding upstream 8149 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 54718 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 55056 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 215931 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 1026038 7606040 ~ 7666482 (-)
G143659 NA other downstream 781155 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 2447925 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 3347110 3120229 ~ 3217229 (-)
G143145 NA other downstream 3854335 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5917728 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 1773987 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 2256358 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 2292883 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 5555376 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 5764669 12344671 ~ 12348328 (-)

Expression


Co-expression Network