AMCG00004860


Basic Information

Item Value
gene id AMCG00004860
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6540191 ~ 6559350 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004860
ATGATAGGACATCAGGAAAAAAACCTGATTCAATCTGGCTTGAAAATGACCTGCACGGTGGAAATAAGTGGAGTTGCACAGCAAACCTTTCTCctgaagGTAACCAATCCTTCTGTAGAAGAGTTCCATGGTATTTTGGCAAAGGATAGATTAACACTTTCACCAAAGCTGACCCAGAAGTTGGTTGAACAACTTGCACAGCCCATCAAATTTGAGTACATCAAGGGACGTGTTGGGGCCGTATATGCTACAGCAGACGTCTCTGGTACAGTCCTGAACATCGTGAAAGGAATTCTGAGCTTCTTGCAAGTCACAGTCATTAGCACCAAAAAGGTTTACAATCTTCAAGAGCCTGGCATTCAAGGCATTTGTCACACCAGCTACGTTCTTGAAGACGACAAAAAGGCGAATGAAATCAAGGTTACTCGATCTATTGACTTGAATAACTGCAAGGAGAAGGCAATGAAAGTCCTTGGCATGGCTTATGCACCGGCATATGCAAACCACGCAAAGATAGCAACAAATGCCAGAGGAGCCGTCACCTACAACTACATCATAAAACCTACACCTGATGGTTCTTTGATAACGAAAGCATATGCCCAGGAGTTACAAGAGTTTGCACCAGTCGATATTAATGGTGGCTCTTCAATGATAGAAGTTAGTAAAAAACTTATTTTAGTTGATGTGACGGAGATGTCAGTCCACATTCCCTCAGTTCCTTTGGTCTTAAGAGGGTCTCTGAAGTACAAGTTTGGTAGTGAATTAAATCAGATTCCATTGCTACTCATGAAAACTGACAACTTGGAAGCAAAGATTACAGAAGTATTGCATCGCTTAGTGCAGAGAAATCAGCCACAGGTTGATGCGCTCTCCCCCACAGATTACCTCCAATTTTGCCATTTACTCCGTGTTGCAAATTTGGATGAAATCGAGGCTGTTTGGAAAAAATTCTCTGGAAAGAAAAACTACAGGAGATGGATACTGGATTCAGTAGTTACTATTCCAAACATTAATGTCCTGAGGTTTCTCAAAAGCAGAATTGAGAAGACAGAGATAACAGAATATGAAGCTTTCCAGGCCTTTATAGTGACCTTCCATCTCATGACAGCTGATTCGGAAGCGATACAGCTGTCTAAgACGTTCCTGCACAAGTCATTCATTAAGTCATCTACTATCCTGCAAAGAACCATGACACTACTCTATGCGTCCATGGTGTACAGGTACTGTGTTGATCGTCAAGATTGCCCTCCAGACGTTCTGGAACCTCTGCACAATCTTGTCGATGAGGCCATCAGCAAAGCCAACGAAGAGCAGATGATCCTGGCCCTAAAGGCTCTTGGGAATGCAGGACAGCCCTCCACCATCAAGTTCATCAGGAGATTCCTGCCTGGATTTAACCCTGGATTTGCAGAGCCTCCTGTCCGAGTCCAAAATGAAGCTGTCCTGGCTCTCAGAAACATTGCCATCAAAGCCCCCAGGATTGTGCAGGAGATCGTTTTGCCCATCCTGATGGACCGTGACTTACACACTGAAATCAGAACCTATGCATCCCTGGTGATGTTTGAAACAAGACCATCTCTGGCCCTTGTGTCAACAATAGCGGAATTCCTGTTGAAGGAGACCAACTTACAGGTGGCCAGTTTCTGCTATTCCCAAATGAAAGCGCTGAGCAAATCCAGTACCCCTGACAACAGAGAACTGGCGGCCGCGTGCAATGTTGCTGTGAAGATGCTTCGATACAAGCTAGACCAGCTGAGCTACCGTTACAGCAAAGCTTctcattttgattattttcaagATCGGATCCAGAACGTTGCAAAAATGatcGTAAGCACCTGGACAGGAAAGGACAACCCAATGCAAATAGTAGAACGGTTTCTGAATGGGATTGAATTGGAGTGGAACGTACCATATCTGGCATCTGAAATACGTTACATAGAATCGACGAGTCTTGGTCTTCCAGTAGAAAACAGCCAGTATTACATGATTATAACTGGCGTATCGATCAATGCTCAAACACAAATCCATCCAGCTCCAACAGACGGGTTAAGAATAAGCCAGTTATTGAATTCCAATATTGAAGTGCAACAAGATTCCATGTTGAGCTTGGCCAAAGACTTAATTTGTTTCCATGGAATTAACACAGATCTCATACAGGTGGGCTCTGAATACCATGCCGAACTACGTATGGCACTGCCACTAAAGTTTGACATGAAACTGAACATAAGGGACATGAAGTTTCGTTCAGAAATGCCCCCATTGCAGCAGGCCAATAAGCTTATAGAATTCAAGTCTCAGGTGTTTTCGGTGCTACGAAATGTGGAAAACCTCGCTCATATTAAAAAGCATCTAATTCTGCCTGGTGCCAGTGCAAACCATGCTCCAAAACAGCATTTTGAGCCCTCTGACAAGGCAGAGGGGGATTCAGCAGGAGTTGTGAAGGGAAGCATTTCTGACGAGATCCTATCCCAAGATGATGGCTACACAGGTGACCAGAACAAGGTTACACCACAGCTGCGGCATCTGTGTACCAAAGCTCCTAACTTTGGGGTGGAAGTCTGCTTGGAAACAAAAGTAGCAAATGCCATTTTTATCCGGGATTGTCCTCTCTATCATTTTCTTGGAGACAGTTATGCAAGACTAATTGTTCAACCAGttcaaACTGATGCCAATATtgagaaaatacaattcaagatcaATGCAGGATCCGAAAAATTCACTACTGTGATTCGGTTCAGAGATGTTGTTAAAAGCCTTAAGAAGGAATCAAATGCCACTTCATCTTCCTCATCAAGCAGCAGTGCTTCAATAGGAACCAGACACCATGGAGATGATGGCACACAATGGTTGGGAAAGGATCtctttgcaaccaagtattctTCTTCATCCAGTTCCTCCTCCTATGAGAATAGACGTGGCCAGGAAACACCAGGCAGCAGAGTCATGGGCAGTGGAAGAAAGAGCAGTCATTCATCCAGCTCTTCACAGTCGCAGGGCAGAGCGGATTCTGATGGCTTTGAAGACTTGCTACCTTCCTCTCAGGAGTTCATAGGCGATTCTGTTTCTCCTCTTGTGGTCGCCGTGATTGAAGCAGTAACCAATGATGGCAAGGTGCAGGGATATGAAGCGGCTGCATATCTTGACCCCAATCCCATGAAAGACAACATTCACCTGCTGGTGTTTGAAATTAATGAAGGCAGTAAATGGAAGATGTGTGCTGATGCTGGGCCGAAAGAGTCCACTGATGCAGTAATGgCGATGCTTCGATGGGGACAAGACTGTGAGGATTACAAAATCAAAGCAAAGGCTGCATTATTGAATAATCCTACATCTAACAAAGCCATTCAACTCAAGGTTCAATGGGAAAAAGTGCCAAGATAcctgaaaaaaaatgcagaaagGTTCGCAGATTATGTCCCAGGCGTATTCTGGGCTCTAGGATTTTTTGAGGAATATGAACGAAATCCTGCAAAGCAGATTTCACTGACTATTAAAGCTACATCTTCTAACACTATTGAGACATTAATCAAGGCTCCTAAGaTGTCACTGTATCAAGCTGGCATCCCAGTTCCTATCAATATACCTTCCAAATGCCTTTCAGATACAAACATGTACCCatgcacaaattattttaaaaacctgcCTAATTTATTTGTCCAGGGAATGAAAGCCCATTGCTCTGTTACTGGAAACAATTTCATAACATTTAACAATGTTAGATTCACGTCACCAGTGCCCAAAGGCTGTTACCACGTCTTAGCTCAGGATTGCACTGGTGACCTTAACTTCCTGGTGCTGATGAAAGAAGaagcaaacaggaaacagattgATATCAGAACACCTATTgggaaTATAAACATGTATCTAGGAAGTACCAGAGAACATGGGCTGGTGTTTAACAATGCTGCGCTGCCCCTTTCCCTGTTGCCATTCAAAGACCCATCAGGAACATTACTTATCTCCAGTCTTGAACGTGGCCTTCTTGTGGAAGCACCAGCACTTGGGCTTGACAGAGTGGCGATTCAGCCATGGATGACCGGAAAAACTTGTGGCCTCTGTGGACACGCTGATGGAGAAAAGCTGACTGAGTTCAGGATGCCCAATGTGAACACAGCCAAGAGCCCGAACCATTTTGTCCATTCCTGGCTGCTCCGTGATGAATCTTGCTCATCTGccTGCAATTTACAACAAGACTTGGTGACATTGGAAAAGCACATTACAAAACTGGGAGTGGACTCAAAATGCTTTTCAGTGGAGCCCCTTCTGCGGTGCCGGTCTGACTGTTCGGTGTCAGAGACAACACCTGTATCAGTTGGATTCCACTGTGTACCAATAAGTTCTGGTCCAAATGAAGAGGACAGTGAGCTCAGGAGATCTGAAAACACTCAAATCAAAGTGGATGCTCACATTGCTTGTCACTGCTCTCCTAGACATTGCAGTTAATCCTATTCAGGATATGAAAATGGCTATTTGCCACTTTAAGGGTCTTGAGTTAATGTCATGAAGCAATGAAATGAAAGTTGCTTTCAGTTGCTTAATAAACATATTGCTACTCTGGTTCCCTTGTTaccaattatttcatatttcagaaaCACTACACACCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004860 True 4605 mRNA 0.44 30 6540191 6559350

Neighbor

gene id symbol gene type direction distance location
AMCG00004858 NA coding downstream 30875 6502488 ~ 6509316 (-)
AMCG00004861 NA coding downstream 198313 6246989 ~ 6341878 (-)
AMCG00004854 zranb2 coding downstream 600366 5916766 ~ 5939825 (-)
AMCG00004853 NA coding downstream 625215 5910214 ~ 5914976 (-)
AMCG00004848 NA coding downstream 809551 5714950 ~ 5730640 (-)
AMCG00004859 NA coding upstream 4989 6564339 ~ 6580002 (-)
AMCG00004857 NA coding upstream 30870 6590220 ~ 6609157 (-)
AMCG00004866 NA coding upstream 977380 7536730 ~ 7562285 (-)
AMCG00004865 ttll7 coding upstream 1013841 7573191 ~ 7582511 (-)
AMCG00004875 asf1b,as1la coding upstream 1055003 7614353 ~ 7616498 (-)
G143619 NA non-coding downstream 1137850 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 1522560 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 1554497 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 1682045 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 2348910 4187958 ~ 4191281 (-)
G143759 NA non-coding upstream 28801 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 75370 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 75708 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 236583 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 1046690 7606040 ~ 7666482 (-)
G143659 NA other downstream 757007 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 2423777 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 3322962 3120229 ~ 3217229 (-)
G143145 NA other downstream 3830187 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5893580 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 1794639 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 2277010 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 2313535 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 5576028 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 5785321 12344671 ~ 12348328 (-)

Expression


Co-expression Network