AMCG00004861


Basic Information

Item Value
gene id AMCG00004861
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 6246989 ~ 6341878 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004861
ATGACCACTTATTGGGGAGGTCTGGGTACGGCGAAGCGGCGCTGGGTACCCTACACCGCAGGCCCCGGGTCCCATGCCCTGTGTTCCCCTCACCTGGGCAGCCATCTACTCCTCCCTCGTTGTACCCTAGAAGAGTCCCTGACATCAGAGCCGAGAGAGCAGCCAGAGGGACTTTTAGAGGGGAGCTTTGTGAGAAGGTACCTGCCACCCCAAGCAGATGTGAGTATCAGACAGCAGTACCTGGAGCGCCAGTGGGGGAAAGGTGAGGGCAGGCGGTGGAAGAGTGCATGCACGACGGACTGTGCTGCTGACCATCGCCGGAGGTTATGTGCAGTTACATCCGTGAATACATCCGTTATTGAGTTCCTCCGAGAGCGGGGAGTGCCAGAGGAAGCTAATGTTAACAAATGTGACCACATGGACATCATAAAACCATGCATTGCAGTGGACTATGAAGAACTGAAAAGGCTCTATGATGACCTCCATCCAACATCAAAGAAGGTGTTGAGGCTGTTGGCGTTCACAGCTGAgatgacaggaaaacaaaaagaagtgGAGAATCACCTGAGAAACCTGGCCTGCGCTGCCCGCTCACTGCACTGCGGGACTCCAGAGCCCAGAGATCCGCCCCAGCGGGCAACCATGTCTCAGGTCATGCTAGTGGAGGTCGACCTGGACAAAACATCACCTGCGTTGAGAAACGGAGGGAAGAGCTGGAATAAGAGCTTTGTAAAGGTTTGCAAACAAAACGAGGAAAGCAATCTAGCAGTGATGGACATAATGATCGTGGTGCAGGATGCATGTTGCTCTGGAAGTGGAGCTGGTCAGGTCACGGAATTCGGTGTGATTCCTCCCAGGGGCTTATGGGAGATAGCAGTAGAGAATGCTCACGGATGGTGCAATGAGATTTATTTCGGAATTGAAATCCACTCCCATGGCATATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004861 True 945 mRNA 0.53 8 6246989 6341878

Neighbor

gene id symbol gene type direction distance location
AMCG00004854 zranb2 coding downstream 307164 5916766 ~ 5939825 (-)
AMCG00004853 NA coding downstream 332013 5910214 ~ 5914976 (-)
AMCG00004848 NA coding downstream 516349 5714950 ~ 5730640 (-)
AMCG00004843 rab3b,LOC107592692,LOC107653655,LOC107669838,LOC108429523,LOC106574047 coding downstream 834188 5400208 ~ 5412801 (-)
AMCG00004844 nrd1a,nrdc,LOC106613566,LOC107738192,LOC105906141,LOC105011400 coding downstream 849646 5382153 ~ 5397343 (-)
AMCG00004858 NA coding upstream 160610 6502488 ~ 6509316 (-)
AMCG00004860 NA coding upstream 198313 6540191 ~ 6559350 (-)
AMCG00004859 NA coding upstream 222461 6564339 ~ 6580002 (-)
AMCG00004857 NA coding upstream 248342 6590220 ~ 6609157 (-)
AMCG00004866 NA coding upstream 1194852 7536730 ~ 7562285 (-)
G143619 NA non-coding downstream 844648 5327715 ~ 5402341 (-)
G143544 NA non-coding downstream 1229358 5016847 ~ 5017631 (-)
G143539 NA non-coding downstream 1261295 4985388 ~ 4985694 (-)
G143528 NA non-coding downstream 1388843 4791690 ~ 4858146 (-)
G143430 NA non-coding downstream 2055708 4187958 ~ 4191281 (-)
G143759 NA non-coding upstream 246273 6588151 ~ 6588746 (-)
G143771 NA non-coding upstream 292842 6634720 ~ 6634963 (-)
G143773 NA non-coding upstream 293180 6635058 ~ 6635410 (-)
G143782 NA non-coding upstream 454055 6795933 ~ 6796223 (-)
G143834 NA non-coding upstream 1264162 7606040 ~ 7666482 (-)
G143659 NA other downstream 463805 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 2130575 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 3029760 3120229 ~ 3217229 (-)
G143145 NA other downstream 3536985 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 5600378 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 2012111 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 2494482 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 2531007 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 5793500 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 6002793 12344671 ~ 12348328 (-)

Expression


Co-expression Network