AMCG00004865 (ttll7)


Basic Information

Item Value
gene id AMCG00004865
gene name ttll7
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7573191 ~ 7582511 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004865
ATGGTATTCCTGAAAACCAGGGACGAAGATGAAACCGCCAATCTCATTTGGAATGACTCTGCTGTGCAGCACGAGAAAATCGCTGAGCTCCGGAACTACCAGAGGATTAACCATTTCCCAGGAATGGGGGAGATCTGCCGGAAAGACTGCTTGGCAAGAAACATGGCCAAGATGATAAAGAACCAACCTCAGGACTACAGCTTCATTCCCAAAACCTGGATCTTTCCAGCTGAGTACACGCAGTTCCAGAACTACGTGAAGGAACTGCGGAAGAAACGCAAGCAGAAGACATTCATCGTGAAGCCCGCCAATGGAGCCATGGGTCATGGGATCTCCTTAATACGAAACTGTGAGAAGCTCCCAGCCCACGATCACTTCATTGTACAGGAGTACCTCGACAAGCCCTTCCTCATGGAGGGCTACAAGTTCGACCTGAGGATTTACATTCTCGTCACCTCCTGTGACCCCCTGCGCATCTTCTTGTACAACGACGGGCTCGTGAGGATGGGCACAGAGAAGTACCACGCGCCCAGTGAGTCCAACCTGAACCAGCTGTACATGCACCTGACAAACTACtctgtaaacaaacacaacgAGAACTTTGAGAGGGACGAGACGGCGGACAAGGGCAGCAAGAGGTCCATCCGCTGGTTCACAGAGTTCCTCCGCACCAACGACTACGACGAGCTCGTGGTGAAGACCCTGATTGTGGCCGAGCCTCACGTCCTTCATGCCTATCGGATGTGTCGGCCAGGACAGCCCCCTGGGAGTGACAGCGTCTGCTTCGAGGTCCTGGGATTTGACATAATTTTAGACCGGAAACTAAAACCCTGGCTTCTTGAG

Function

symbol description
ttll7 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL7 (tubulin tyrosine ligase like 7).

NR:

description
PREDICTED: tubulin polyglutamylase TTLL7

GO: NA

KEGG:

id description
K16583 TTLL7; tubulin polyglutamylase TTLL7

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004865 True 843 mRNA 0.52 6 7573191 7582511

Neighbor

gene id symbol gene type direction distance location
AMCG00004866 NA coding downstream 10906 7536730 ~ 7562285 (-)
AMCG00004857 NA coding downstream 964034 6590220 ~ 6609157 (-)
AMCG00004859 NA coding downstream 993189 6564339 ~ 6580002 (-)
AMCG00004860 NA coding downstream 1013841 6540191 ~ 6559350 (-)
AMCG00004858 NA coding downstream 1063875 6502488 ~ 6509316 (-)
AMCG00004875 asf1b,as1la coding upstream 31842 7614353 ~ 7616498 (-)
AMCG00004872 NA coding upstream 106515 7689026 ~ 7699315 (-)
AMCG00004873 NA coding upstream 151386 7733897 ~ 7741545 (-)
AMCG00004874 NA coding upstream 179316 7761827 ~ 7763619 (-)
AMCG00004886 NA coding upstream 218339 7800850 ~ 7818689 (-)
G143782 NA non-coding downstream 776968 6795933 ~ 6796223 (-)
G143773 NA non-coding downstream 937781 6635058 ~ 6635410 (-)
G143771 NA non-coding downstream 938228 6634720 ~ 6634963 (-)
G143759 NA non-coding downstream 984445 6588151 ~ 6588746 (-)
G143619 NA non-coding downstream 2170850 5327715 ~ 5402341 (-)
G143834 NA non-coding upstream 23529 7606040 ~ 7666482 (-)
G143839 NA non-coding upstream 38655 7621166 ~ 7624705 (-)
G143853 NA non-coding upstream 127368 7709879 ~ 7710575 (-)
G143857 NA non-coding upstream 135749 7718260 ~ 7718802 (-)
G143859 NA non-coding upstream 137663 7720174 ~ 7720886 (-)
G143659 NA other downstream 1790007 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3456777 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4355962 3120229 ~ 3217229 (-)
G143145 NA other downstream 4863187 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 6926580 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 771478 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1253849 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1290374 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4552867 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4762160 12344671 ~ 12348328 (-)

Expression


Co-expression Network