AMCG00004867


Basic Information

Item Value
gene id AMCG00004867
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7742678 ~ 7870853 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004867
TCTAAGGGAGAGTTGTAATAGATGATCATATAAGATGTTCTTGTAACACAGAGCCAACATTTAGTGGCAGTAAGACCTACCCATACAAGTATGAGGGTATCCTTCTGACTGGACTTCCTGAGAAAGGCTTGAGCAGAGCTGGGCTGAAGATTGACAGTTTGGTGCAAATCACAGAAGTGGGACAGAAAACCTACTCGCTTCAGTTTAAGAGTCCAGTCATCGAGGAGTATAATGGAATCTGGCCCAAGGCTCCATTTGTGCCAGCTGCAAAACTAACAAAGGCTTTGGCAAGAGAGCTCGGGCAGCCTGTCAAATTTGAGTACGACAATGGCCATGTTGGGCACATATATGCTCCAGAGGAGGTGTCCGACACCGTGCTCAACATCCATAGAGGAATCCTGAATATGCTGCAGATGACCTTAAAGAGCACTGAAATTGTGTACGAACTGCAGGAGCCTGGCATTGCGGGGTCCTGCCAAACCAGCTACGTCATtcaggaaaacaagaaaaaggatGAAATCATCATCACCAAGTCTACGGACCTGAGCAAATGCAAGGAGAAAATCCATAAGAACATTGGCATGGCTTGCTTAAATGAGCATGCCCCCCACAGCAAGATTGGAAAGAACTTCAGAGGTTCTGCTGCTTACACCTATGTAATGAAACCCATGAAGGCCTCTGTCCCTGGTTACCTGATAGAAAGTATAACTGCCAATGCCGTGTATCAATTCTCTCCATTTAATGAAATGACTGGAGCTGCTGTCACTGTTGTCAGTCAGAAACTGAACTTTATTGAGGGAAAAGCAGTTGAGGCCAGTTTCCCAGACCAACAGTTCCTGAGTCGAGGAGGCCTTCAGTATGAATTTGCTTCTGAGCTCATTCAAACACCAATTCAGCTTGTCAGAAGCAACAATCCAGAGACAAAGatcAAAGACATTCTGGAGAATCTGGTCCAAAATAACCAGGACGTTGTCCACAATGAGGCCCCAGCCAAGTTCTTGGAACTCACCCAGCACCTACGCCGCTGTACCTATGAGAATATCAATTCAATCTGGAAGCAGTTTTCTATACAAATGTACAGGCAGTGGCTCTTGGATGCTCTCCCAGCTATTGGAACCCCCACCGCCTTCAAGTTTATCATTGAACGGATCCAGGATCAGGAAGTCACCACTGTCGAGGCCAGTCAGATACTGGTTACGGCCATGCACTTTGTCCATGTCAACCGTGAAACCATGGATATGGCAAAGGCGTTTGTAGTTAAACTGGAAAGAATGCAACAGCCCGCATTGTTTAACTGGGCTATGCTGGCCTATGGTACCATGGTAAACAAGTActgcaatgaaaatgaagaCTGTTCTACTACCTATTTGAAGTACCTGCATGACTTTGTGGCCGATGCAGTGAGCAGAGCCCATGAGGAACACATGGTGCTGGCCCTGAAGGCCATTGGCAATGCAGGTCAGCCCTCCAGCATCAAAACCATTCAGAAGTTTCTGCCAGGCTTTGGGGCTGGGAAGGCAGAATTCCCCATAAATGTCCAGGTGGATGCAGTGATGGCTCTGAGGAACATTGCCAGGAGAGAACCCAGTAAGATCCAAGAAATTACAATTGCGATCTCTATGGACACCAGACTGCATCCAGAGATTCGAATGATGGCCTGTGTGGTTCTATTGGAAGCAAAACCCCCTGCTGCTAAGATTACTATTTTGGCTGAATCCTTGCTGAAGGAGACCAGTTTACAAGTGGCCAGCTTTGTGTACTCTCACTTGAAAAGTCTGTCCAGGAGCAAGGCACCTGAAAACCATTCACTGTATGCTTACTCTAACATGGCCTTAAAACTCCTTAGCTCTAAACTTGATCGACTGAACTATAGATACAGCAAATCAATTCacattgatacatttaatgATAACTTAATGGCAGGAGCAGGTGTGGATTTATACCTGATGAACAATGCAGCCAGTATGTACCCCACGGCTATCATAACTAGATTGCAGGCCTACTTACTTGGTTCTACATCTGATCCCCTTGAGtttggTATCCGGGCAGAAGGTTTGGAGGAAATTTTTCAGGACAAAAATGAGGAAGTGGACAGCATCCTTTTTAGTAAGAAGATTGAAGAGGTCATGAAAATGCTAAGAAGATGGAAGTCGGTTCCATCTGAGAAAACACTGGCATCCATGTATATTAAGCTGTTTGGACAAGAAATTTCTTTCTCTCACCTGAACAAAAAGTACATTGAAGAAATCATTCAGGTAACCCAAGAGCCAGTAGGGAAACAGAACCTCTTGTGGAAGATCTTGGCCCGGCTTCAGAGTGGAACCTCAGTGCGCTGGTCCAAGCCCCTGCTGGCGGCTGAGATGAGGCATATCATCCCAACTTGTGTTGGCTTACCCCTGGAAATGAGCTGGTACTCTGCGGCTGTGGCAGCCACTTCCATGACTGCTCAGGCTCAGATCACCCCGGCTCCCACCAGAGATTTCAATATGTTCCAGTTTCTCAACTCTGCAGTTGAACTCAAGACTGAGGCCTCCCCCAGTTTGGCTGTGAACAATATTGCCACAATGGGAGTCAACACCGAGCTCATCCAGTCAGGAGTGGAGTTCCATGTGAACACACGCACCATTGTCCCAGTGAAGTTCACCGCCAAGATAGACATAAAGGAGAGCAACTACAAGCTGCAGACTGAGCCTTGCCAGGTTGAGACTGAAGTACTGACAGTGAGagCTCAGGCATATGCTATATCAAGAAACATTGAGGACTTGGAAGCAGCTAAAAATACCTCCTTATTACCAGCATCTGCTGAGACCAACCCCTTGAAATCACGTTTCAACCCAGCCACTCGGCCGAGAGACTCATCTGAAACTACTTCCAGGATGTCCACAGAGATGTCGTCTCAGGAGTCAGTAACCTCGGAGGCCCAGAAGAGGCAACACTCTTCTTGCAGAAAGTATAACACCTGTGGAAGCTTTGATTCATTTGGATTCCAATTGTGTTTTGAGGCCAGCTCAGAAAATATTGCTTTCCTCAGAAATGTGCCACTTTACACTATCATTGGAAAGCATTTCTGGAAAATTGCTCTGAGACCAGCAAAAAATCCTGAAGCTATAGTAGAGGAGATAGAGATTGAAGTCCAGACTGGGCCCAAATCTGCTTCTAAAATCATCACAATGATGCCCATTGATGAAAGTCCTAGAGATTCAAGGGGGAAGGGCAGAGTCTTGACAAAATTGAGGAAGATCCTGCAGGGATCTGCAGGCAATGGTACCAGACTCAACAGAACCTCCTCCTCCAGTTCACAGTCCAGCAGCCAGTCTAGCAGCCGAAGCAGCAGCTCGAGTAGCAGCCAGTCCAGCAGTCGACGATCGGGGGCATTGGACTTCCGAAAGCCTAGCAGGAACAACCCACATCCTAGACAGACATCTCAGCAGAAGAATAGGCATCACAAGGCATCTTCCAGCAGCAGTGGCAGCAGTTCCAGCAGCAGTAGCCGCAGCAGTTccagtagcagtagcagcagcagttcCAGCAGGCGCTCCAGAAGCAATAGGAGGAACAGTAAGCAGCAGGAACGCCAGTCCGCATTTGGAGGCCAattcagcagcagctccagctcGAATTCTAGCAGCTCCTCTAGGAGTTCACGCTCCTCCAGCTCGTCTTCTCAGCAGGATTTCGGCGGCCGACCTGCAATCTACAAACTCCAGTTCAGAGGTGATGGACATGCGCTTAAGAGTGATCTAAACAAGAAGAGGagttcttcttcttcatccAGTTCCAGAAGATCctcaagcagcagcagcagcagcagcagcagcagcagcagaagttCCAGCGACAGTAGCAGCAACTACAGGTTTTCCTCCAAGGAACAGgCTAAATTCCTGGGAGACTCAGTGGCTCCTCTGTTTGCCATTGTTGCTCGGGCCAGGAAGAGTGGGAGTGACAGGAAGCAGCAGAGATACCAGCTGGCCGCCTACGTGGATGCACATCAACGCCGTGTGCAGGTGCTGGCTGCAGAGACCAATGGCAACGACAAGTGGCAAGTCTGTGCAGATGCTGAACTTCTGAATGAATACAAAGCACTGGCGGTGATGAGATGGGGTCAGGAATGTCAGGATTACAAAGTGGCTGTGAAGGCAGAGACCGGTCGTCTGGGAGCTCATCCAGCCCTGCAGATCAAAACCAAGTGGTGGAAGATTCCACGTCCTGTCAAACACGTAGGCAAGATATTAGCAGAGTATGTACCTGGAACCACGTTAATGCTGGGATTTTATCAGAAGTGGCACAGGCACGCATCAAACCAGTTAGCTCTCTACTTGGCTGTTTCTTCACCGAGGACTTTAGATTTGTTGATAAAGACTCACAGGaTGACACTGTACAAGCCAGCTGTGGCACTTCCTGTCACATTACCCTTTGGGCCCGttgataaaacacaaacacctcCTGGTCTTCTACGCAGCCTCAGTCAAATCCCCATTGTTTTTGCAGAGTCAACCAAATCAGAATGTATTGCACAAGGGAACAAGTTCACTACCTTTGATGATGTCCAATACACCTACAACATGTCCCGTAGCTGCTATTATGTCCTGGCCACCGAGTTAAGTGCCAAGTCCCGATTCACGATCCTGATTAAACGGGCTTCTGTGTCTGAGAATCTCCGAGTCTTGAAGGTCCAAATCGGTAATAAtcaAATTGAAATGCTGCCGtcaaccaatggcaaactgagGCTAATGTACAATGACCAAGAGGTTTCACCCAGGAACCTGCCATTCTCACAAGGTActattgaaattaaacaagaaGGCCATGGCCTGGTTCTAAGGGCCCATGAGAACGGCGTAGATGAGTTGTATTTCGATGGTGAGAATGTAAAGGTGAAGATGTGCGCTGGCATGAGAGGGAAGACATGTGGATTGTGCGGTCAAAACGACGGGGAGAGGAAGACCGAGTACCGGATGCCCAATGGACGTGTCGCCAAGTCAGAGACCAGCTTTGCGCAATCCTGGATCCTGCCTGATGACAAATGCAATGAAGAGTGTAAGTTCAGACGAGAACATGTGGAACTGGGCAGGAGGGTGTCTGTTCTGGGGGAGGAGTTACGCTGTTACTCCACTGAGGCCgtgctgctctgtgctgccGGGTGCTCCCCCACTCACACTGCCCCCGTCAACATTGGCTTCCACTGCCTCCCAGCAGCGTCAACTATCAGCAGCAGAGATTATGCCATCTTTGCGGAGAAGACCGAGGACAGAGAGGACTCTTTTCTGGCCCACACAGAGTGCTCCTGCCCAGCAGAGCGCTCAAGCTACCCAAACATCCAGGCCATCTGGAAGCAGTACAAAGACCAACAGGATTACAGACGCTGGTTTCTGGATGCAGTCCCTGCCGTAGGAACAGCGCATGCTCTGACATTCATAAAAGATGTGTTCCAAGAACTGTCGACGGCCGAGGCCACTCTTGTCCTAGTCGCTGCTATGCACCTGATAACAGCAGATCAAGAAAATATGAAGCTTGCTTCCCCCCTCCACAATTTTGTGGATAAAGCTGTCAGTGATGCTGATGAAGAGAAGATGGTTCTGGCCCTGAAAGCCATGGGGAATGCAGGACAGCCCTCTAGCATCAAGCGCATCATGAAGTTCCTTCCAGGTTTTGTCTCTGGAGACTCTAAATACCCAGTCAAAATCCAGGTCGATGCAGTAATGGCCCTGAGGAACGTTGCCAAGACAGACCGCAAAAAGGTGCAGGAAGTGGCTGTGCAGCTGTTTATGAACAGAAACCTCCACCCAGAGGTTCGCATGATGGCCTGTGTGGTTCTGTTTGAGACCAAGCCCACTATGGCTTTGGTGTTAACTCTCGCCGATGCTTTACGAAAGGAACCCTCCATGCAAGTGGCCAGCTTTACCTATTCCCACATGAAAGCTCTGACCAGGAGCACGTCTCCTGACTACGCCCCCGTTGCCTCTGCCTGCAATGTTGCTGTAAAGATCCTCTGCTCCAAATATGACAAGATGAGCTACAGCTACAGCAAAGCCTTTCACGTGGACACTTTCCGAAcTAAACTGATGGCTGGAGTTGCTGCCAGTGTTTACATGATGAATGATGTTGCGGACCTCCTGCCCAGTGCTGTGGTGACCAAAATCCGGGGTTACTTGTCTGGCGCAGCTGCAGATGTTCTAGAGatgGTCACTGAGCCCATACAGCAACATAAGGTGGTAAATGAAGTGGTGAAATATATTCAGGAAGGAATTGCAGGCCAGTGGTCCAAGGCCTCTCTGGTCACTAAGGTGCGACGCATTGTGCCCACCTGTGTGGGTCTCCCCATGGAGCTGGCTCTGTACTCCGCTGCTGTGATGGTATCAGACGTTAACATCAAAGCCCAGTTGACTCCCCCTGCCTCTGACGACTTCAAGATCAATCAGCTGATGGACACAAAGATACATCTGAATGCTGAGCTCTCTCCCAGGGATTCTGAGGGATCCATTGGCAAACTGGAGTTTGAGATTCAAGCAGGACCGCAGGCAGCTTCAAAGCTCATCAAGTCTATAACGCCAAAGGACTCTGATGATACAGGAGAACCTGGCCAAGGAAAGACTGTCCTACTGAAACTGAGGAATATCCTTAAAACAGCAAAGagaaacaaaagcagctCCAGTTCCAGCTCCAGGTCCAGCTCCTCCTCTAGTTCTCTgaacagcaacagaaacaatagCAGCTCTTCCAGCAGCTCCAGACAACCAGGCACCAGGGACAGAAATGTTCTCAGAAGATGCCCCTCTTCCAGCtcttcatcctcatcctccgcttcctgctcctcctcctcatcttcctCTTCCAAACAAAGGGTTCAATCGAACAAAAACACGAACCGTGATCAGACCAACAGACGTCCTGGGagaaagagcagcagcagcagcagcagcagcagcaggaagaacaggagcagcagcagcagcagtagcagtagcagtagcagtagcagcagccAGTTGAACAGGaaagcGGGGAAGCCTCCGATTTACAAGCACAAGTTTAAGACAAACCACATCCATCAGCATGGCAGCAAGAGGCAGTCAAAACGCAGCTCCTCCTCCAGTGCTACATCAAgccaaagcagcagcagcagtagcaggaGTGACAGTGCCACGAGTTTTGAGACAGCCAAGGCTCGTTTACTGGTGGAGTCCAGGTCCCCTATTCTGGTAATTATCGCAAGTGCAGTGGGTGCTGACGGAATGAAGCTGGGCTACCAGCTTGCTGTCTACCATGAGCTCACGTCAGCCAATCCCAGGGTGCAGATCATTGTGGCCAACATAACACAGGAAAGCAACTGGTGCCTAATTGCTGATGGGATGCAGCTCAGCCAGCACAAAGCCATGGTCCGAGTCGCTGAATGGATGAAAGGGAAGACCTGTGGGATTTGTGGAAGGGGTGATGGCGACACCAGGCAGGAATACCGTACTCCCAATGGGCGCATGGCGGTACACGCTCTCAGCTTCGCCCACTCTTGGGTCCTTCCAGCAACGAGCTGCCGAAATGATGACCACTCGCATGTGAGCAAAATGGATGCTCAGCGCAGAATCTGGGAGAAGAGTGTCGATATGTGGGAGACAGTGAATGCCCATGTGGCGTGTCGCTGCATGCAAACAGAGCAACCCATTGAAAATCTGGAGATTGAGATCGTGCCAGGAGATAAGGCAGCTTCCAAACTGAAAATTAATTACCTGAAGAGCACAGATGAAGAGGAAGCTCCACAAGGAAAGACGGTCTTGctaaaactgaagaaaatccTGAAAACGCAATTGTTCTCAAAACAGCAacagctccagctcctccagcagctcctcGAACTCCAGACAGGGCGTCAAGAAAGACGAGGCCAGAACTCCGGTCAGACCAATAGAGCTGCATCGAGAAAGGGccgcagtagcagtagcagtagtagcagcagcagcagcagcagcagcagtagcagaagtagcagcagcagcagcagcagccgcagaAGCAGCAGAGGCAGAGTGGCCATGCGAGTGATGAAGAATCAGGGAAGACAATCGAACAGCAGTTCTCTCAGCAGCAGCCAGTCTTCCAGCAGCGAGGAGCGAGGATACAAACGAATTTATGACTTCAAGTTTCTTTATCAAGGAAGACGAGAGCGTACTTTCCTTGGAGACTCCATTGCACCTTTAATGGCCATCATTTTCCGTGCCAGAAGGAGTGATAAGCAAGAACAAGGATACCAGGCTGCCATCTACCATGACCCATCTTCACCTAAATCCAGAGTTCAGGTGATAGCTAGTGACATCAGAGAGAAGAGCAAGTGGCAAATCTGTGTGAATGCTGCCAAGACGGAAATGCACAAACTCCAAGTGGACACCAGATGGGGTCAGGAATGCCAGGACTACAAAGCTTCTCTCAAGGCAAAGATTGGCACTTTGGCAAATAACCCAGCCGTGCAGCTTAAAATTAAGTGGAAGAGGGTTCCTCggactAGCTGTGACAAGAGATATCACCAGCTCCACTGTGGGCTTGCTCTCAAACAGAACCACACAGGCCATCATGCGCACCTCCGGGTGGAGCTTTTCATCGTTAAACAGCTGCAGAGCCACTTCCTGCACCTGCAGAGGAACCAAGACAATGCATGTTCACACCTGAGGAATGAGCCAGAAGTCACAAGTCTAGACATGGAAGTACTGCTTGTCCCCGACACTTACCTTCTGTCTGGAATGAGGCACAGTGTGCGGTACAGGTCTCCCGTCGATGGCATCTTGGAGGCAGCGGCGGAGGAGGAGGATTTGGGGGTAGAGAAAGCAGCCTGGGAGACTGATTTGCCTGGAGTTGCTGCTCTGGAGGTGATCCAGGTCACTGCTGGACTTGAGCTGCTCCGTCTCCAGGTCCTCCACGGTGCGCAGGCCCCTCCGGTGCAGCTGCAACAGCTCATACATGACATTGAGCACGAGGAGGGAAGCCCAGTGACGACACCTCCTGAGGAAGAGACCTGGCTGTTAAAACCGGCCCACCTGCCCGCAGTGCAAGCCCAGggTTACGCCAATCTGACTCACCTGATTGACATAGGAAACGCACTGACTGATGATGCTAAACCCTCCCACTCCGGCAGCGGGCGCAGGTCGGCAGCTTCCGACTCCCGGACTCAAAAACAAGCATCCCGGTCATTGGTCAGGTGGTTGTTAAGCAACCAACACCTGCTGTCCGCATTGGCTGACGCCGGCGCGGCGCTTCCCTGTAGTGACGCACAGCGTGGAGACGGGTGCGAACCGCGGGGCTGGCAGatcTTACAAAGAGATCGGTTTACCTTCACGGACAGTGCGCCGCGGCAGATGAGCTCATTCCTTGCCTGCCTGCTGAAGGGACATCTTGCCCTCCTCTGTGATGTTCGTGCTGTTGTCCTGGGTGGAGCTCAGGGCTCGGGCATTGGCGCGCGAAGACCTCTGCCTCCTGGTCCCAGAGTAAATGATGGGGTTCATGACGGAGTTCAGCACAGCCAGAAGCAGGAGCCAGCGCTTGAATTGCAGCACCTGACACTGCTTGCAGTTCAGGCCGTCCAACAGCAGAACCACCAGCCCAGGAGTCCAACAGATTACAAAGGCACCTGGATTGCCACCATGATCAGGAACAACAAGAGGTTGGTCACAGACCAGAAGATCAGGTAG

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004867 True 9674 mRNA 0.50 63 7742678 7870853

Neighbor

gene id symbol gene type direction distance location
AMCG00004871 NA coding upstream 25200 7701969 ~ 7717478 (+)
AMCG00004869 prkacb coding upstream 76241 7648790 ~ 7666437 (+)
AMCG00004863 adgrl2 coding upstream 523623 7190355 ~ 7219055 (+)
AMCG00004862 adgrl2 coding upstream 563775 7167992 ~ 7178903 (+)
AMCG00004855 NA coding upstream 1206834 6526630 ~ 6535844 (+)
AMCG00004882 NA coding downstream 36323 7907176 ~ 7936127 (+)
AMCG00004881 cef10,cyr61 coding downstream 221958 8092811 ~ 8094461 (+)
AMCG00004895 NA coding downstream 418375 8289228 ~ 8294685 (+)
AMCG00004896 NA coding downstream 427604 8298457 ~ 8323043 (+)
AMCG00004897 LOC107700566,LOC107710622,LOC107578300,LOC105022607 coding downstream 462918 8333771 ~ 8345890 (+)
G143772 NA non-coding upstream 1107268 6635058 ~ 6635410 (+)
G143721 NA non-coding upstream 1241957 6500236 ~ 6500721 (+)
G143630 NA non-coding upstream 2280824 5461492 ~ 5461854 (+)
G143526 NA non-coding upstream 2884514 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 3490589 4251709 ~ 4252089 (+)
G143923 NA non-coding downstream 2760 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 107793 7978646 ~ 8049310 (+)
G143970 NA non-coding downstream 138678 8009531 ~ 8012018 (+)
G143997 NA non-coding downstream 230173 8101026 ~ 8101339 (+)
G144082 NA non-coding downstream 922824 8793677 ~ 8825780 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 8619 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 50317 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 118608 7608901 ~ 7624070 (+)
G143626 NA other upstream 2318557 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 3370589 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 1829314 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 2077557 9948410 ~ 10015424 (+)
G144677 NA other downstream 3791828 11662681 ~ 11663368 (+)
G144940 NA other downstream 4909727 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 6284302 14155155 ~ 14188329 (+)

Expression


Co-expression Network