AMCG00004870 (rpf1,LOC107745333)


Basic Information

Item Value
gene id AMCG00004870
gene name rpf1,LOC107745333
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7718273 ~ 7734059 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004870
ATGGACGCTGAAGAGGTATGCCTGGGCTCTcaagagaaaagcaaaaagaagaagaaaggccagaaaaagcaaaagcagaacAAATTGCAAGAAGAAAAGGGAGAGGAGCCGAAAGTGGAAAATGATGATAAGCCACCGGAAACGGCGTTCCCACCGGCTTTTAGCGTGTCTgtcatcaaaaacaaacagcgCAGGcacttcatgtttttaaaatacaaactggaGAAACGAAAGGAAAAGTTggcattgaaaaagaaaagaaagaaggagagagaagccCTGGGAGACAAGGCACCTCCAAAGCCTGTCCCTAAAACCATAGAAAACCAGAGAGTCTTTGATGAAACGACCGTGGATCCTGAAGATGAAGAGGTAGCTTTTGATGAGGGAACCGATGAGTTTTCAGCATACTTCAACCGCCTGACGAATCCCAAAGTTCTCATTACGACATCGGATCGACCCCGGGGGaggaCTGTGCGATTCTGTGAGCAGCTTGCCTCTGTAATACCAGACTCCCATGTGTATTATAGAAGAGGCTTGGCTCTGAAGAAGGTCATCCCACAGTGTGTGGCCAGAGGTTTCACGTACCTCCTGGTAATCAACGAGGATCGCAAGGTGCCCAatgGTTTCCTTCTTAGTCATCTGCCGGATGGCCCCACTGCCCATTTCAAAGTCAGCAGTGTTCGTCTTCGCAAAGAAATGAAGAGGCGAGGCAAGGATCCCTCAGAGCATTCTCCAGAGGTGATCCTGAACAACTTCAGCACGCGGCTGGGCCACACTATAGGGCGCATGTTTGCTGCTCTCTTCCCTCACGACCCGCAGTTTGTGGGACGGCAGGTAGCCACTTTCCACAATCAGAGAGACTTCATCTTCTTCAGGTTTCACAGATACATATTTAAGAATGAGAAGAGAGTCGGCATACAGGAGCTTGGCCCCCGCTTCACCTTGAAACTGCGCTCGCTTCAGAAAGGGACTTTTGATTCCAAGTTTGGAGAGTATGAATGGGTTCACAAGCGCCATGAGATGGATTCAAGCAGACGAAAATTCCACTTGTGAAGAACAATGGACTGCAcccttcacttttttttgttcccccatCCCTTGTACACAAATATACAGGAGTGCGTTTTATTTACAAAGCTGTTTTGTCTTACTTTTTACACTCTCAAATGGAAATATTTTCCTTAAACCCATAGTGCAATATGACTTGTTTATTTCTACAGTGCTCAATATATACTACATCTTTAAACAAGACAGATGAAggatcatttttatttcctgcttttcaaaataaaataaaaaacaaatccagtttTAAAGAGTACAAAAAGACAGTTGTACAAGGCATGAGATTAGCATTGTATTCTTGCAgtaattgggaaaaaaaaaaaaaactttgaagaGTTTAGTGATTCAGTCAGTCTTTAGGTAACATCCCATCCATCCTTCCATCAATGCTCTCACTAAGGGCATGTATTGGGACTATTCAACACAATTTTCAGTAGATTGAAATGAACACATCACACCAGAGTCTAATTTGTAAGAAAAAGGCACAtgtacaataagaaaaaaaaattggcaacTATAAAAAAAGGTACTTTGAAAGCAATTAAGTATCCAtaagcagatttaaaaaaaagatctgtGAAATTACTCCCATCTGACTCGGTGTTTCTGCTTCACAGTGATCGGTTAAAACCTGGAAttaacacacaaaacagttaCAAAAATGAGCAAACTTTCTGTGTCCTGAACGGGTTGGTGCTGGAGGACACCCCGGTCAGTAAAGGGTCGTGGTGTGCATTCTGGATGCAAAACTGCTGGAGGTCTGCAGCTGCTTGTGacacCTTCACCCGGTTGATGCTGGCCTCGAAACGCAGCTGCTGCACCACCTTCTTCATGGAGTTGATGTTGGATGATCCCGACATGTTAGCTTTCAGTGTGAACGGGTGCAGTTTCCAGACAAAAGGTGGGTCGACAGCTCCTTCTCTCGCTTGTGCTTCGGGGTCCGTACGCTTCCGCTTTGTGCCTCAAAAAAGCGCCCGGGCTGTGCGACACCTAGAGGCGGAATACGGCACCACCACGACCAAGGGGATGACGTGCGGCTCCCGTGACGTCATCGCTCCCTCCACCACCTGCGGAAAGATCAGCTGAACTATGTGCTCAGTGGGAAGGCTGTTCTGAGCAGTGTGCTTGGGCTGGGCAGCAGCTCTCCTTTTCAAAGCACACAGTTCTGTCTCCACACCAGTGTTGCATGTGGGTCTCAAAATATACCAAACCCCCGACACAGAAGTACAGCCGTACAAAGATGCTGGGACTTCTGACCCATTTCTAGAAGTTGTCGGATTTGAGATGAATAGATCATTCGAGGAAAGAAGACCAACAACCGCCGGgCTGGTGGAGCTCCATGTGTTATATGTCCCAGATGAACAGTGGAATGGGAAGCTGAACAAAGCCTCCGCAGATGGCATTGATAGCTTCCTATCTGCAGGCTTTATCAGGGTTTTTCCTGACCTGAGTTTACGGGCTCTACGAGACGAACTGACAGGACTTCTGGGCTCAGAGAAAGCAATCGacaattttgtgtttcttaaatGTGTGGGTAGAAGTTTGGCAGTGGTCaaaagtaaacaagaaaaagaactGAAAGTAAAGTCCTTTGCACCGCCATACGCACCTCAGCCAGAATTATACTTGTTACCCGGAGTGGAAAATGACAGAAGCATTTACTCTGCTCCTCGCATGCCTGACAGACAGAACTACCACACAGAGCCTCAGGGCTATCATTCTCCCCAGAAGACCAGCATTGTGCCTGCTGTGAAAAACCAGGCAACTAACCCCAGGATTACGCAAAGGGCTCCCCATAACCCCTCTCCTGCCCAGAGCCCTGATGAGGATGTGGACGAGGATGATGAGGTGGAGAGTTTTAGTTCGGGGGAGGACAAGGAAGACAACGTCAGCCGAGATCAAGGCTGCAATTGGGAAGACACTGTCAGTCCTCCGAGGAGAATTCAGGAGCAGCCTCAGCCGATAGGAAAGAAAGCAGAAAGACTACCGAACACCAAATCACAAGTAAAGAGCAGGACAGCTGTGAAAAAGGGCAGTCGAGTCCTGAGAAACAGCACGAGAGATTCTGGCGTGCCTGAGTCCCTGGGGGACAGAGACTCTGTATTCtcacacagccagagcagGAAAACCGAGAACACTCTACCATCAAAAGATCACAGGGAACAAATCAATCAGGTCTGTGACAATCCTCTGCCCCTGCCCACCCCAGCACTGTACACCTTGCCCCCAGTCGCCCCTCTCCTAGCTAGGGCTACACACAATCCTGCTCCTCCAGCCTTCATCACAGACAGAGATGAACTGGTGGAGGGAATTAAGTTGGCAAAGCAGGAGAGGAAACAGCTTGAGAAGACTAGACAAGATTTGTTGAGACGGGCGAAAGACCTTTTAGGCCAGAACCGTCAGAGGAGAAATCAAGCTCGAGATGCTTGGAAGAAAAGGTATTTTGACACTAAAAAGGCCACTGTTCCTTTGGAGGAGACTCTGAAAAAGGTGCGTCAGGAACTGGAAACATATTACCACAAGGTGCTGCATCAACTGCAGGCCAGGGATGCGCGGAGCAAGCCAAAACACCATGGCAAAACCAAGAATGATCTCATTATTAAAGTCACGACGGAGAACCACGAAATAGATCAGCTGAAGAGGAAAGTGGACGATGCTAAAATGAAACTTGTGACTGAACTCAAGCTCAGGAAGCAAGCCGCCTCAGAGCTGCGGGCCCTCAGAGCGGAGCTGTCACAGAAGAAGACCCAGACCTCGCTCTCCGGCCCACAGCGAGGCTCAACCACACAAACCCTTGGACACCGCAGCCGGTCACAGGCCCAGCGCATCCCAGGCTGAACAGTGAACATCTCCACACACACCCCTGGCTCTTCTCAGTCCTCAGTCAGGACTGGACTAAACCTACCTTGGCAGTCACTGAACATAAAACACACcatattactgcacttttttttttt
>TU180912
GGTCaaaagtaaacaagaaaaagaactGAAAGTAAAGTCCTTTGCACCGCCATACGCACCTCAGCCAGAATTATACTTGTTACCCGGAGTGGAAAATGACAGAAGCATTTACTCTGCTCCTCGCATGCCTGACAGACAGAACTACCACACAGAGCCTCAGGGCTATCATTCTCCCCAGAAGACCAGCATTGTGCCTGCTGTGAAAAACCAGGCAACTAACCCCAGGATTACGCAAAGGGCTCCCCATAACCCCTCTCCTGCCCAGAGCCCTGATGAGGATGTGGACGAGGATGATGAGGTGGAGAGTTTTAGTTCGGGGGAGGACAAGGAAGACAACGTCAGCCGAGATCAAGGCTGCAATTGGGAAGACACTGTCAGTCCTCCGAGGAGAATTCAGGAGCAGCCTCAGCCGATAGGAAAGAAAGCAGAAAGACTACCGAACACCAAATCACAAGTAAAGAGCAGGACAGCTGTGAAAAAGGGCAGTCGAGTCCTGAGAAACAGCACGAGAGATTCTGGCGTGCCTGAGTCCCTGGGGGACAGAGACTCTGTATTCtcacacagccagagcagGAAAACCGAGAACACTCTACCATCAAAAGATCACAGGGAACAAATCAATCAGG

Function

symbol description
rpf1 Predicted to enable RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Orthologous to human RPF1 (ribosome production factor 1 homolog).

NR:

description
PREDICTED: ribosome production factor 1

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0019843 rRNA binding molecular_function

KEGG:

id description
K14846 RPF1; ribosome production factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004870 True 4025 mRNA 0.47 23 7718273 7734059
TU180912 False 626 TUCP 0.50 4 7729389 7731000

Neighbor

gene id symbol gene type direction distance location
AMCG00004871 NA coding upstream 795 7701969 ~ 7717478 (+)
AMCG00004869 prkacb coding upstream 51836 7648790 ~ 7666437 (+)
AMCG00004863 adgrl2 coding upstream 499218 7190355 ~ 7219055 (+)
AMCG00004862 adgrl2 coding upstream 539370 7167992 ~ 7178903 (+)
AMCG00004855 NA coding upstream 1182429 6526630 ~ 6535844 (+)
AMCG00004867 NA coding downstream 8619 7742678 ~ 7870853 (+)
AMCG00004882 NA coding downstream 173117 7907176 ~ 7936127 (+)
AMCG00004881 cef10,cyr61 coding downstream 358752 8092811 ~ 8094461 (+)
AMCG00004895 NA coding downstream 555169 8289228 ~ 8294685 (+)
AMCG00004896 NA coding downstream 564398 8298457 ~ 8323043 (+)
G143772 NA non-coding upstream 1082863 6635058 ~ 6635410 (+)
G143721 NA non-coding upstream 1217552 6500236 ~ 6500721 (+)
G143630 NA non-coding upstream 2256419 5461492 ~ 5461854 (+)
G143526 NA non-coding upstream 2860109 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 3466184 4251709 ~ 4252089 (+)
G143923 NA non-coding downstream 139554 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 244587 7978646 ~ 8049310 (+)
G143970 NA non-coding downstream 275472 8009531 ~ 8012018 (+)
G143997 NA non-coding downstream 366967 8101026 ~ 8101339 (+)
G144082 NA non-coding downstream 1059618 8793677 ~ 8825780 (+)
AMCG00004868 samd13 other upstream 25912 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 94203 7608901 ~ 7624070 (+)
G143626 NA other upstream 2294152 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 3346184 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 3608618 4109022 ~ 4109655 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 1966108 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 2214351 9948410 ~ 10015424 (+)
G144677 NA other downstream 3928622 11662681 ~ 11663368 (+)
G144940 NA other downstream 5046521 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 6421096 14155155 ~ 14188329 (+)

Expression


Co-expression Network