AMCG00004871


Basic Information

Item Value
gene id AMCG00004871
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7701969 ~ 7717478 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004871
TTTGTGTTAGTTGCTTCTCATCTACAGCAGTGAAGTGAAGGCGTGTTGTGGAGAAAATGAGGCTCATTTTACTTCATGTAATCTTTCTGAGTTTCTCCTCTTGTCAGGGAGACATTTCCTGTAGGAATGAAGCTGGCGCTCCTGTAGACTGGTTCATCATTTACAAGTTGCCCAAGTACAAAATAGGACAAATTGGAAGTGGAGTGGATTACATGTACCTGGACTCTGTGGCTAAAGAGTGGCAGTTGAGTGGGTTTCTGGTCAATACGAGTCAGGGGGCTCTTGGGAAGACACTGGGCCAGTTGTACGAGAGACAGGAATACAAGtCAAACAGCTCTGCATATATGCTATATAACGATGCTCCTCCCTTGCTGGACTATATGAAGTATCATGGACACACAAAAGGAGTGCTACACTTTGACCAGTTCCAGGGCTTCTGGCTCAGCCACACTGTGCCTCACTTCCCCCCTTTCCCAGAGAAGGGCTATGCTGAGCAGCTGCTGTCCTATAACCCCCGTGTGTACAACTGCTCCTTGCCTGAGGTCTTTCAGCATGAGCTCCCCAGCCTGGCCTGTATCTGTGAGGGCTCCAAGATGCCCTGGGTGCCCGGGAAGAGGGTCAAAAAGCTGGTCTCTGCTGGAGGGGAGAGCTTCCTCAGCCTTGCCAAATCCAGCTACTTTGTTGATGACATATACGCCGGCTGGGCAGCAGAagttttaaagacaaatcttttgaCAGAAACTTGGCAACGGAAGGAGCATGAGCTTCAGTCCAATTGCTCCCTCCCAGAGCACGTCTTAAACATCAAAAGAGTCAAATTGCCTGGCCCGGTTCTGTTCTATAATAACTATGATCACTCCAAGTGGTGCGTCTCTCAGAACTATGAAGATCAGTGGGTCTGCATCGGAGATCTGAACCGGGAAGACTGTCAGAAATGGAAAGGAGGTGGACTCCTTTGTTCACAAAACCTGTTTATCTACAGAGCTTTCCGGGATGCTGTGTCCTGGTATGTCAGCTGCAAAAATGAGACTCAGGGCCCGGGGTGGAGAGAGCTCTCCtgctcactgctgctgctgttttgctgTGTGTTCGCTGGCAGTGTTGGAGTGTCCTGCAGGAATGAGAACGGGGATTCTGTGGACTGGTATATTGTGTATAATCTTCCTGATCTCGACCGTAAGACAGGACTGATGTATTTGTACATGGATAATAACAGCAAAAGCTGGAACTACGGGAAAAGGAACATAAATGACCCAGAGAGTGCCTTGGCTCAAACCTTGTGGCCGTTTTTCACGTTTATTGAGAAGAAGATTGAAGGCTTCGGATATCTGCTTTACAATGATCAGCCTCCAAAGGAGTACAAAACTGCTCCCTCATCTTTCGGACATAGCAAAGGGGTTGTGATGTTGGACAGACAGACCGGAGTCTGGCTCACTCACAGCACACCACAATTCCCAGGCAAAACAAGGAGATCATTTTGGCCTTCCAGTGGTAAAAGTAATGGACAGACCTTCTTCTGTGGGACATACAAATATAGCAACTTCAGTGATATTGCCATACAGCTCCAGTACATTCACATTTACACCTTTGACTTTCACGTCCCAACAACCTTCCACGATGGCCTTCGCTGTGTGGCTCAGAGAACTTGCTATCCCAGGAAAGCCCCATGGTTTAAGAGGCTGGAAATGAAGTCATTAGCAGGAAACACTTTTATCAGCTTTGCAAAATACTCCAGATTTCAAGATGATCTTTATTCTGGTCTGCTGGTCGATTATTTAGGGGATGACATTTACAGCAAAAGCTGGGGGAAACTTCGCAGACCTCTGCCATCAAATTGCTCAGGCAGTCACAAGGTGTACAATGTGCAAGAGATGCAGCTACCTCAAACCCAGCCTTTCGGCACAGCGGTGGATCATTCCAAGTGGTGTGTGACTGATAGTGATGGCCAACCATGGACTTGCATTGCAGACATGAACAGAGAAGAGAGTCAGTCTAAAAGAGGTGGTGGGGCTGTGTGTACAAATGACACTGGAGTATGGGAGGCCTTTAGAAAAATTGTCAACACATATGAGAATTGCCGTCATGTTGAGCTTTagctaaaatatattatatatatataaatttagcAAAATAGCCTTCGAAATGTCATAAGCAAAgttaatttattagtttttgaCTGGTTTGAACTTCTtagtttttaagtgtttaacCCTTATGCCCCCTTGTCCCACGGGCGGAACttggtataatttaaaaatacaagagCAATTCCAGCTGGGGTTTTAGGGGATTAATATGGACATCATaggaatacaggtatgtgacacctatcaaattaaaataaacaaactatgctataatattctgcaaacttgatcatgattagactatattacagtactaccaAGTACTaccagaaatgcattttcttgaaaTGTTGACTGTTTTGACCTTTTCCTCCTCAAGTCTATGGGAAATCTTGATCAAcattttatgttgaaataccactcaaattgaaaCTTGTAGAAGTTGTTGTGTGAAAATAGCATAAtgataatgtgcatttgaaagaacctagcCTATGTGGAAAAGTTTTGATAAAAGCTATACCACAAAATATGCACAAAGCATGTGGTACCACTCAAATTAAAGCATTCAAACTGCAGcatcagtttctgcattgttgatcatgattagacacactatattGCAGCACTACCACCTTTTTTCCAATATATGGCAAGCATAATTATGAAgtactagtcaaaatacaacttaTAAGACAATCTGGGTGAAAATTTGATAAAAATTGAAGGAgttatgatcatttatttaaaaacccaAAACCCAAGTCCATTTTTTCCTTACTTTGCAAGTCAATATCTCCACTGGACTGTGTTGAGTTTGAAGCATGTTCTGTGTGATCTGTAGCTGCTCctgattttgaattaaattttgtgtctttcttttcttgctgcAAGAGAAAATTTTGTGTTGAAACAAAGTGAATTGTCATCAGATTTCGGTGCACTTTGTGTGCTTGTGGATGGGTTTGGGGGATATTGAGAAATGGGTGAGGTACTTTTTCTATTTTAGCAACTGCCAAATTAGAAACTGCCAGTAAACTTTTTTGACCTTTTTTACTTCtttgtttgttgctttgctGTTGCTGTAAGTTTCTATAAGGGAACTACTTTACGATCATCATATAAGGAATGTATCTGAATTATGTTCATATAAGTTACTGCCTATATAAACTGCTCTGCTCTGCCTGTGTGCAGAGAAACTTCTCTGACTGTCAAAGGAAACTGTCAGACTGTTGTTTCCCTCCCTGTAATTGCTTGAATAAACTACTTTGATTCTGC

Function

GO: NA

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004871 True 3365 mRNA 0.42 12 7701969 7717478

Neighbor

gene id symbol gene type direction distance location
AMCG00004869 prkacb coding upstream 35532 7648790 ~ 7666437 (+)
AMCG00004863 adgrl2 coding upstream 482914 7190355 ~ 7219055 (+)
AMCG00004862 adgrl2 coding upstream 523066 7167992 ~ 7178903 (+)
AMCG00004855 NA coding upstream 1166125 6526630 ~ 6535844 (+)
AMCG00004856 NA coding upstream 1371514 6316901 ~ 6330455 (+)
AMCG00004867 NA coding downstream 25200 7742678 ~ 7870853 (+)
AMCG00004882 NA coding downstream 189698 7907176 ~ 7936127 (+)
AMCG00004881 cef10,cyr61 coding downstream 375333 8092811 ~ 8094461 (+)
AMCG00004895 NA coding downstream 571750 8289228 ~ 8294685 (+)
AMCG00004896 NA coding downstream 580979 8298457 ~ 8323043 (+)
G143772 NA non-coding upstream 1066559 6635058 ~ 6635410 (+)
G143721 NA non-coding upstream 1201248 6500236 ~ 6500721 (+)
G143630 NA non-coding upstream 2240115 5461492 ~ 5461854 (+)
G143526 NA non-coding upstream 2843805 4852163 ~ 4858164 (+)
G143447 NA non-coding upstream 3449880 4251709 ~ 4252089 (+)
G143923 NA non-coding downstream 156135 7873613 ~ 7874434 (+)
G143962 NA non-coding downstream 261168 7978646 ~ 8049310 (+)
G143970 NA non-coding downstream 292053 8009531 ~ 8012018 (+)
G143997 NA non-coding downstream 383548 8101026 ~ 8101339 (+)
G144082 NA non-coding downstream 1076199 8793677 ~ 8825780 (+)
AMCG00004868 samd13 other upstream 9608 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 77899 7608901 ~ 7624070 (+)
G143626 NA other upstream 2277848 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 3329880 4371709 ~ 4372089 (+)
G143404 LOC107757485,LOC107715094,LOC107588062,LOC107653629,LOC106613586,LOC107592717,LOC107669813 other upstream 3592314 4109022 ~ 4109655 (+)
AMCG00004870 rpf1,LOC107745333 other downstream 795 7718273 ~ 7734059 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 1982689 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 2230932 9948410 ~ 10015424 (+)
G144677 NA other downstream 3945203 11662681 ~ 11663368 (+)
G144940 NA other downstream 5063102 12780580 ~ 12781170 (+)

Expression


Co-expression Network