AMCG00004872


Basic Information

Item Value
gene id AMCG00004872
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7689026 ~ 7699315 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004872
aagaagctACCCTTTAAAACTGCAGCTGAAGTCCACATAGCAGTTAGTTAAGAGACAACATCAACAAGACCGTGTGGTTAGGAGCAACTCCGATATCAGGACAATATGGCAAACTATTCATCAACTGGCAATCAGGACGTGGAGTTTGTGCGCACGGGCTATGGCAAGAACATGGTGAAGGTGCTACACATCCGGAGAGAAGGCGGCCATCACTTCATCACCGAGATCTGTGCCAACGTGCAGCTCACACTGAAGACGCACAAGGACTACCTTGCCGGGGACAACTCCGACATCATTCCCACCGACACCATCAAAAACACGGTGCAAGCAGTGGCCAAACTGAAAGGGATCCCGAGCATAGAAATATTCGCCCTGGACATATGCGACCATTTCCTGACAAACTTCAAGCACGTGACAAGAGCCAAGGTTAATATTGACGAGGCTCCTTGGAAACGTCTGGAGAAGAATGGCATTGAGCATGCCCATGCCTTTATTTACAACCCCGAAGCCATTCGCTTTTGTGAGGTGGAGCAGCATCAGAATGACAGTCCAGTGGTCCACAGCGGTCTGAGAGATATGAAAGTGCTGAAGACCACCCAGTCGGGCTTTCAAGGATTTCTGAAGGACAGGTTCACCACGCTGCCCGAAACCAGGGACAGGTGCTTCTGTACTGCCGTGTATGCCAAGTGGCGTTACAACAAGTCCAGAAATGTCCCCTTCGACTCTGCATGGAAAACTGTGAGAGACACCATTGTCGAGAAGTTCGCCGGCCCCTATGACTGTGGGGAATATTCACCTTCCGTTCAGAAGACTCTGTATGAAACTCAGCTTCTTGTCCTGGACAGAGTGGCGGAGGTTGAGGAGATTGAGATAGTCATGCCAAACCAGCATTATTTCACTATAGACATGTCAAGAATGGGCCTCTCGAACCAAGACGAGGTCCTCCTGCCACTGGATAACCCATCTGGGAATATTACCGGAACAGTGAGGAGGAAACCGCGGTCACGACTCTGAAGAGAGTGAAAGTCAAGACTCTACACTCTTGAAAACAAAGGATGTCACAAAAGGGGGCACACAGCACCCTTCCAGACATGGAGTTAACTGTATGAAGGCCttttaatcacatttcaaaagcacacatttggTAACAATTTATCCTAGGTAAACAACAGAGCAAATGGCTTGTTTACagcttgaaataaaatgtttattggaGGTTAACATAGTCTGTCCTCACCATTTACAGCGTTTAACTGCCCTGCCATTAAATCTCAATCAATTAGTTTTGCACACATGGTTTACTGTGCTGGTTTATTACAAGCTTTTAATGATAGCAGCCACACAGAGCCTTACCCatcttcatataaaataaaagggtCATCGGGTGAGAATGGTTGTCTTTGGTTCCCTGGGTtgatatcatttatttatttaaagtctaCAAATCTaagctttattatttaaaaaaaaaactgtgcattaaaatataGTTCTTTTTATCATGCCaccattaataaacaaatgacattCTGATAATACAGTTTTTTAAGACAGGTAAACAAAAGGCAGAATAAACTGCACAACAACCAAGAACACAGTTTTTCACCGtcacaatatacaaattaataaacacaatagcatttggatttatttatttacatacaaaaaaaaaaccaccccaagaataaaataataataaaaaaaacacatcaacaaaCCCAGCTTTAACTGGCTAGATAgggtgtttaaaattaataaagcgTGGGGGGAAGAAACATCCATATTGACAAACAACCCTTATATGATTATCAgaacaatacatataaatacaaagtcAAACAGTTCAGATtgcatcaaataaaaacattaagtgCTGAAAAGAGGCAGTCAATTGCCTTTCTTGTATCAGTTCTTACTTGTATGTGAAAGGAAAGTGTACCAGGCCTTCTACATTATGCAAGAGTAAGCCAGCCGATGCTATGATATTTTATCTTTCGCTGTACAAAAATGACTTGTGTGGAAGTCTTTCACCAGTCATtttgtgcaaaaaaacaaaccaatcaaccGTGTAGTTCTTTAATTAAGCAATCAAGTTCAGACTGGCACTCATGAACTCAGTGAAAAGGTTGTTCACAAAAAAGAGTTTCGAGTGCAAACCTCagagaaatattaaaatcttaCAAAGTTAGGGCCCGGGGGTTGCGAGTTTCAGTTCAAGGGAATTCACTTTAGCTAGTACTATGATCTGTCTACCAGTCATTTCTGTACATGTTCTCATCAAAATAACTGTTGCAAAGTGATTGTACCTATTGCACAATGTTAGATTTATCTTCTTGTAGggaatacaaaataagtaaaactgGTACTTTTCGTTAAGTAGAAATGTGATTAGATTGACAGACGTGTAAAGCAGAATAAGCAGGAAAAAGGGgcaagcaggaaaaaaaacagacaaacaaatgatACAGCCAATATCAACTGGATACCAGCCTAAAACTCTTCTCTGGTattcataaagaaaaacaacagcattttaCAGTTTCTCCAGTTTTGAAGTCAGCATAAAACAGTGAGAAAATACACTCCCTAAAAAGGCAACACCTTCAATTCTCACTTCTATCCTTTTTCACATTAGCTTCAGATTCGCAAACATCCCTGCAAAACCACAGGCTCCTGTGCACAAGACAAACGTCTATGCGTGCGACATCAACAAAGCTACATGATGCACTGCACACCGAGAATGCTCATTTGCGCGTGAATGCATCTTTAAACTGTGAAATTAATGCAACCCACCCTGGAAAAGTACCGCCCTTTCCTCCCCTGTGACTAGGAAGTCTATTTTAAGGGATACTAAATGAAAAGGATCGCTGACATTGTGAACCTTTAACACAGCTTCCAGGGCTTTCTGCGTGAATGAAAACGACATTGCTCCTTCGGGCAGGATCAAGGGCGACACCGAATGACTTCTAAGCAGCTGCTCTGATTCACTTCCCTTTCCAGTTTTCTGCAATTGGCTTACATTAAAAAGGTCAGTGTATTTGGCGTGTAAGAACGAACAGCGGGAATAGGCACAGGGCTGCTACTTCAGTCTCTATACTCAACCGGGACGAGATCATCCAGTCTCCGAAATACCTGACTATCAAAATGCTTGGTTTAAAAAGAACCCTATGTCAACTACTGAATGAAGTACATCCCAACAAAGACGCCTTAGGCTCTGAGACGACGCCGAGGCCTGGTAGTCGAGTGAAGCCTGATGGATGTCAGAATAAGCACCTTTTAAATACCTGCAGATTTCTAGCCACTGAGACCCatggcttgttttattttctgcccGTTTTTTAAAAGCCAGGGTCCCCATGGTCTGAGAGACATTATGTTCATACTCACAAAAAGAGTGTCTTTATCTCAGGCAAAATAAAGGACACCCCCTTAGGCAATTAAAGCACCActagtaataaaaatgtaagggGGGGAGGGTAGTCAGAGTATACAAGTTTATCCAAAGACTGGATTTCACATCTTTTGAATCAAAAGTGCTAGGAGTACCACTTTCCCCTCAAAGGGTAACACCCATGgtgtttgtaaaaataaagactCAATGTCAAGTTAATCAATCAGATATCGGGTGTAGTGCTGCCAATTTATATACACTTAGAAACTGAGAAGGCAGTTAGCTGCCCGAGTACCCAGGTGTCTGCATTTCTGATTTGCTCAATTCTGTACTCATAATATTAAGAAGATTGTTTCCCTTTTTACAACAAAAAGGAGATCTTATctgaaataaagtgttttgtatGAAACCAATCCCTCGAACTCTTCAAAAATATGGGCTGTGATTGTCAACTCAACATCCCATTCCTTAATATAGTATTAGATGTTATGTACAATGCTTGCGTGATTAATtgacatttcacaaaataacaGCATTAAAATTCAACCTACAATTATTGGACCTGGTTGTCTTTCAATCTTGGGTGAGAGTGTGATGCATTTTAGAAAACTCCTGCAGACAGAAAAGTATGCAGTTCACACTGATCCAAACAGTCACTGTTTAAGCGCTAGCTGTGTTTATATCAGTTGTGGTTACCTTTacttaaatgtacaaaaaaaaaaagcccagtatttttctataaataaatccCCCAGAGAATTACTAATCACATACCTGCCAGGTGTTTCTTATGCTTTGCTTTAAAGACAGCATTTAAGAAAAAGTCAGTTTTATATACTCTATATAAGAATGTTTAAAGAAGTGTAGTTCCTCCTTATGCCTTTCTAGAAAGATATAAAATTTAGTGGCAAGCTAAATATACAAGGTTTTTGATGTtggtcaaacaaacaaacaaggatgTCCACAAGGATTGTCCCCTTCACAGACGTCCAAAATTCAGAACTTGAAATGAAAGGATCAAACCCTAAAGAGAAGTTCTCCTCTAAGGTTTCTTCATA

Function

GO:

id name namespace
GO:0006144 purine nucleobase metabolic process biological_process
GO:0019628 urate catabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005777 peroxisome cellular_component
GO:0004846 urate oxidase activity molecular_function

KEGG:

id description
K00365 uaZ; urate oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004872 True 4449 mRNA 0.40 8 7689026 7699315

Neighbor

gene id symbol gene type direction distance location
AMCG00004875 asf1b,as1la coding downstream 72528 7614353 ~ 7616498 (-)
AMCG00004865 ttll7 coding downstream 106515 7573191 ~ 7582511 (-)
AMCG00004866 NA coding downstream 126741 7536730 ~ 7562285 (-)
AMCG00004857 NA coding downstream 1079869 6590220 ~ 6609157 (-)
AMCG00004859 NA coding downstream 1109024 6564339 ~ 6580002 (-)
AMCG00004873 NA coding upstream 34582 7733897 ~ 7741545 (-)
AMCG00004874 NA coding upstream 62512 7761827 ~ 7763619 (-)
AMCG00004886 NA coding upstream 101535 7800850 ~ 7818689 (-)
AMCG00004885 NA coding upstream 122530 7821845 ~ 7830604 (-)
AMCG00004887 LOC107564930 coding upstream 138615 7837930 ~ 7852819 (-)
G143834 NA non-coding downstream 22544 7606040 ~ 7666482 (-)
G143839 NA non-coding downstream 64321 7621166 ~ 7624705 (-)
G143782 NA non-coding downstream 892803 6795933 ~ 6796223 (-)
G143773 NA non-coding downstream 1053616 6635058 ~ 6635410 (-)
G143771 NA non-coding downstream 1054063 6634720 ~ 6634963 (-)
G143853 NA non-coding upstream 10564 7709879 ~ 7710575 (-)
G143857 NA non-coding upstream 18945 7718260 ~ 7718802 (-)
G143859 NA non-coding upstream 20859 7720174 ~ 7720886 (-)
G143860 NA non-coding upstream 22873 7722188 ~ 7726165 (-)
G143922 NA non-coding upstream 158035 7857350 ~ 7858712 (-)
G143659 NA other downstream 1905842 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3572612 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4471797 3120229 ~ 3217229 (-)
G143145 NA other downstream 4979022 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 7042415 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 654674 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1137045 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1173570 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4436063 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4645356 12344671 ~ 12348328 (-)

Expression


Co-expression Network