AMCG00004873


Basic Information

Item Value
gene id AMCG00004873
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7733897 ~ 7741545 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004873
ATGAGATCACCAAATACACAACTTCTGGTATACGTGTTTGATACCGGACGGAGCTCATGGAAGTTTTACGACTGGTCTAAAGTCACAACAGTGGCCACATTTGGGAAGTATAACCCGGAGTTTATGTGCTACGCTCATTCTAAAGGAGCACGGATGGTCCTTAAAGGTGATGTGCCCCTCGGTAACATAGTGGACCCTGCCAACAGAACGGACTGGATCTCGGAGCAAGTGGACCTGGCAAAGAAGCAGTTCATGGATGGGATCAATATTGACATTGAGCAGGGGGTGAAGCAGGACTCCCCAGAGTACTATGCCTTGACAGCACTTGTATCATTTGATGTTGCATGGTCACCAAAGTGCATTGATAAGCGTTGCTATGACTATGTAGCCATAGCCGAAGCATGCGACTTGGTGTTTGTGATGTCCTACGATGAGCAGAGCCAAATCTGGGGGGACTGTATTGCTATGGCTAATGCACCATACAAACAGACTCTGGGAGGGTATGATGACTACCTCATGATGAAGATTGATCCAAAGAAGATCGTGATGGGGGTGCCATGGTATGGCTATGACTATCCTTGTCTGGAACTGACCCATGAGGGAGTGTGCAAGATCGCCAACGTGCCTTTCCGAGGGGCCCCCTGCAGTGATGCGGCTGGGCGCCAGATCCCCTACAGGATCATGATGAAGCAGCTCAACAGCTCCACCTCTGGGAGGATGTGGGATGACAATCAGCGAGCACCTTACTACAATTACAAGGACGATCAAGGACAGATCCATCAGGTGTGGTACGATGACCCCGAGAGCATTTCCCAGAAGGCTGCCTATGTCAGGGAGCATGGGCTGCGGGGAATCGGCATGTGGAACGGCGATCTCCTGGACTACAGCAAGGACCCCGTCGCCCAGCAGCAGACCAGAGACATGTGGAATGCTCTTGAGCCAGCAGATGAGAGAGAGCCCTGAGAGCCAAGAGCCAGGGGCTGGTGCTACAAGTTAGTAACACATTGTCTGGAGGCCCGATGAGAAGCCAGCAAACTGGCTTCAACAGTTCAGGGATATGCTGTCATCCACTGTTGAATGGCTTCATTTATTGCTTTCATCGCTCAATAACTTTTGTATTCACCTCGAAAGTGCTTTCTAATACAAATTTTCTTGcattaacaatattaatgtttttttcacttttaaatgctGCTATTACAGATTAATAAtgttcacaaataaaaatatgaatcgagtaatttaacatttcatCAATTTATTGTGTTGACTTTGGTTTAACTAAATTATTAAGTTCATGTAAAATAACTGATCATTAAAGTGCTTCAGAAGAAATCTcattgacttttatttttttggcagtTGTTTTCATCAAGGAAGTATAAGAATAATGTATATGTTGAGAATGCCAAAACAAGATATAAAAGGCAAATGTGTTGCAGTTTTTGGTAGTATTTGAAATTATGCATTCacttgcataaataaaatatgtattagctGGACATTTCAAActagatttaaatatttgttttaacataaTGAAATTACaggattttgtattaataattagCCAGGTCTAAAGCTTGTGtaaaaaccacaaaaaacaatgttttatgcTTATGATATGAACAGCACAATTCATTAcattatcaaatgaaaataaaaatagtatgcttaattaataatttaaacaccCTTCACTGTAAACAGTCATTAAGGGTTGGTCATGTTATGCTGCCTGTGAATTGAGTTGATAGAAGagtaacaatgtaataaaatagaACGTCACACTTACAGGcatgtataaaattaaatgtttctctaTCTGACTGATCTGTAAAGCACGATTCCAAtcaccacatatacaaatgccACTTTATtctcaaatataaaaatacttttcatcttctatattaaaaaaaaaaaaagtgcagtaatatgGTGTGTTTTATGTTCAGTGACTGCCAAGGTAGGTTTAGTCCAGTCCTGACTGAGGACTGAGAAGAGCCAGGGGTGTGTGTGGAGATGTTCACTGTTCAGCCTGGGATGCGCTGGGCCTGTGACCGGCTGCGGTGTCCAA

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004568 chitinase activity molecular_function

KEGG:

id description
K12310 CTBS; Di-N-acetylchitobiase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004873 True 2080 mRNA 0.41 7 7733897 7741545

Neighbor

gene id symbol gene type direction distance location
AMCG00004872 NA coding downstream 34582 7689026 ~ 7699315 (-)
AMCG00004875 asf1b,as1la coding downstream 117399 7614353 ~ 7616498 (-)
AMCG00004865 ttll7 coding downstream 151386 7573191 ~ 7582511 (-)
AMCG00004866 NA coding downstream 171612 7536730 ~ 7562285 (-)
AMCG00004857 NA coding downstream 1124740 6590220 ~ 6609157 (-)
AMCG00004874 NA coding upstream 20282 7761827 ~ 7763619 (-)
AMCG00004886 NA coding upstream 59305 7800850 ~ 7818689 (-)
AMCG00004885 NA coding upstream 80300 7821845 ~ 7830604 (-)
AMCG00004887 LOC107564930 coding upstream 96385 7837930 ~ 7852819 (-)
AMCG00004884 LOC107715712 coding upstream 122014 7863559 ~ 7871431 (-)
G143860 NA non-coding downstream 7732 7722188 ~ 7726165 (-)
G143859 NA non-coding downstream 13011 7720174 ~ 7720886 (-)
G143857 NA non-coding downstream 15095 7718260 ~ 7718802 (-)
G143853 NA non-coding downstream 23322 7709879 ~ 7710575 (-)
G143834 NA non-coding downstream 67415 7606040 ~ 7666482 (-)
G143922 NA non-coding upstream 115805 7857350 ~ 7858712 (-)
G144072 NA non-coding upstream 785986 8527531 ~ 8528907 (-)
G144124 NA non-coding upstream 1174946 8916491 ~ 8921153 (-)
G144142 NA non-coding upstream 1399074 9140619 ~ 9141972 (-)
G144205 NA non-coding upstream 1675987 9417532 ~ 9418417 (-)
G143659 NA other downstream 1950713 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3617483 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4516668 3120229 ~ 3217229 (-)
G143145 NA other downstream 5023893 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 7087286 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 612444 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1094815 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1131340 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4393833 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4603126 12344671 ~ 12348328 (-)

Expression


Co-expression Network