AMCG00004875 (asf1b,as1la)


Basic Information

Item Value
gene id AMCG00004875
gene name asf1b,as1la
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7614353 ~ 7616498 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004875
ATGATGGCTTTTGCAAGTGCACTTCGgtgttttaaaatattttttatatcttttcCCCAGGCTGATGCTGCGAACCCTGGGCTGATTCCAGATGCCGATGCAGTGGGTGTGACCGTAGTGTTAATAACGTGTACATACCGGGCTCAGGAGTTCATTCGAGTTGGATATTACGTGAACAATGAATACACAGACCCTGAGCTGAGAGAAAACCCACCTGTAAAGCCTGATTTCACAAAGCTCCAGAGAAATATCCTGGCTTCAAACCCCCGTGTCACAAGGTTCCACATTAACTGGGATGATAGCAATGAGAAAATGGATGATTCAGAGAATACGAACCCAAACATGCAACCTATACTGACTTTGAGCAGCTTACCATCAGCGTCAAAGGGGCTATCAGTCACTGGGAACTCATTACACCGTATGTCAGACTCGCTCATGAACTGTATGTGA

Function

symbol description
asf1b Predicted to enable histone binding activity. Involved in DNA replication-dependent nucleosome assembly and DNA replication-independent nucleosome assembly. Located in chromatin and nucleoplasm. Part of protein-containing complex. Biomarker of breast cancer.

NR:

description
PREDICTED: histone chaperone asf1b-B

GO:

id name namespace
GO:0006333 chromatin assembly or disassembly biological_process
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004875 True 450 mRNA 0.45 3 7614353 7616498

Neighbor

gene id symbol gene type direction distance location
AMCG00004865 ttll7 coding downstream 31842 7573191 ~ 7582511 (-)
AMCG00004866 NA coding downstream 52068 7536730 ~ 7562285 (-)
AMCG00004857 NA coding downstream 1005196 6590220 ~ 6609157 (-)
AMCG00004859 NA coding downstream 1034351 6564339 ~ 6580002 (-)
AMCG00004860 NA coding downstream 1055003 6540191 ~ 6559350 (-)
AMCG00004872 NA coding upstream 72528 7689026 ~ 7699315 (-)
AMCG00004873 NA coding upstream 117399 7733897 ~ 7741545 (-)
AMCG00004874 NA coding upstream 145329 7761827 ~ 7763619 (-)
AMCG00004886 NA coding upstream 184352 7800850 ~ 7818689 (-)
AMCG00004885 NA coding upstream 205347 7821845 ~ 7830604 (-)
G143782 NA non-coding downstream 818130 6795933 ~ 6796223 (-)
G143773 NA non-coding downstream 978943 6635058 ~ 6635410 (-)
G143771 NA non-coding downstream 979390 6634720 ~ 6634963 (-)
G143759 NA non-coding downstream 1025607 6588151 ~ 6588746 (-)
G143619 NA non-coding downstream 2212012 5327715 ~ 5402341 (-)
G143839 NA non-coding upstream 4668 7621166 ~ 7624705 (-)
G143853 NA non-coding upstream 93381 7709879 ~ 7710575 (-)
G143857 NA non-coding upstream 101762 7718260 ~ 7718802 (-)
G143859 NA non-coding upstream 103676 7720174 ~ 7720886 (-)
G143860 NA non-coding upstream 105690 7722188 ~ 7726165 (-)
G143659 NA other downstream 1831169 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3497939 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4397124 3120229 ~ 3217229 (-)
G143145 NA other downstream 4904349 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 6967742 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 737491 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1219862 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1256387 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4518880 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4728173 12344671 ~ 12348328 (-)

Expression


Co-expression Network