AMCG00004882


Basic Information

Item Value
gene id AMCG00004882
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7907176 ~ 7936127 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004882
CCGCCAGCTGTCTGTCAAGAGCAAGCTTCCGTAACCCCTAACAACCGCAGCGACGCCGGAAAGCAGTTCTGAGAGGCGAGAGCCGTGAACGGACACAGACACGGAGTTATCACTCGCGTCCGCCGGGTTTTTAAAAACGACGCTGAAGAGgCCAGGACAATTTCTgatactgaaacaaaatggcTGACAAGGGGAGTCTGAAAAAAGCAAAGGCTCCAGTAGCCAGTCCCAAAGGCAGTGCAAAGAGACCTAAAAGCACTGCAAGCACTGCAAGCAGTAAAACAGGAGGAAAACCAAAACCTGGTTCAGTTAAGAGAGAGGAGATCGCTTCAGCCACTGGAAGTGTTGGGGAGTTGGGCCCACCTCAGGACATTTTCCCTCTGGTTCTGACCTCCGCAACCCAAGAGCTGTTTGAGTGTCGTGCAGATGAGGATGTCACTCAGGAGAAGCCCTTCAAGATGCTCAGAAAGGAAGAAGTCCTCCAGGACATGAAGACACGAGCAGCTGTGTCTGATTTCCACCCCTTTAAGAAGCTGGTCCTGGCCTATCCTGGGGAGGAGCTCTTGCTAGTGTATGATAGAGACTTCAAATATGGCCAGAGCTTCTATCTCGTTGGAACAGAAGAAACCAAAGAAAGGATTTTGAATCCTCCAGAACGCATGGAGGAAGAGGCTGAGGAGGACGACATGTTCCTGGTCTACAAGACGCCGGAACCTCAGACATGGGTGTCCCTGGGCAGTGAGCTAGAAATCGAAGAGGAATCGGTGAAGGATTCTAGAAGCAAGTTGAGTTACAGGATCTCCAGGGTCCGCCGCGAGTTTGGAGCTCCAGTACAGTTCAGTGATCGCAATGCTTCAGTGGCGAAGGATGGCTACGTGGAATGCACCCCCTACCAGGACAAGAGCTTCAGTATTAAACAGCTGGAGAGGGACACTGGGACACAGGCTGCCCCCCCACTGCAGGACTCCAGCACTCAGACTCAATGGTTTGAAGTAGCTTTACAGCAGAACGAAATAATGGACGTGTTCTTCGATGACTGGGGGGCGTTGGGCGAGGATGAAGATGCATTTGGGGGGAAGGCGGACATGCACCTCAAAGAGTACCAGTCCTTCACTGACCTGCACTTCAGCAAAGAGAAAAGTGTCAGCTGTGTCAAATGGCACCCCACCATCAGCGGAGTAATTGCAGTAGCTGTTACAGAGAGGTTGTCCTTTGAAGACCGGATCAACCTTTCAACTAAGCTGCTCCTGAGCCCTTCACTCATTCTCTTCTGGAGTTTCTCTGATCCTATTAATCCTCAGTTGCGGTTGGAGTGCCCAGATGACATCTACTGCTTTGAGTTCTGCCCCTCGGATCCGACTATCATTGTTGGTGGCTGCTTTAATGGCCAGGTGGTGTTATGGGATATCTCGATGTATACTGAGCGGTTACAGAACTCGCGCACCGGAGGAGGGAAGCACGCCCCCACCAACACAAAGTCATTATCTGGCTTTGAACATAGGCCTGAGAGTGAAGCTCCCATTGTGCGCTACTGTGCCATTGCAGCTATAGAAACTGGACACCAAGCACCCGTTACAGATGTGCAATGGTTGCCAGACTACTATGAGGTCTCCAGGACTGGGGTaccactggaaaacaaaaatgggatTTGTGTCCAGCTTGCCACATGTGCTCCAGACTGctgtgtgttgttttgggaTATCCGAGCCCCTAGAGTTGCCACCCAATCAATGGCAGACAGAAAGAAACCAGAGGAGAAACCGCTGGAAAATCCCCATGGAGTTCCTAGCACCTTCAAACACCTCGACCTCACCTGGAAACCTATCATTAGGGTGTCTCTTCCAAAGATCAATACCAGTGGAGAGTACAGCCCGCTGAAATTCAGTCTGAGGGACAGTGTTGCTGAAAACCCAATGCTCACAAACGCTGATAAAGCTCAGAATCTGGAAAACACAGATGGAGGAATTGAATACAGGGTGTTAAGAGTCCCCTCAGCTAAGCACCTCAAAACTCTGGAAGATATCAGCACCAAGTTCTTTGTGGGAACAGAAGATGGAGAACTTGTGTACTTGGACTGGAAGATGGAAAAGGACAATGACTCTGGAAAAATGATTAGTTCAAAGCCTTCCCATCGCTTTAACATTCACGACGGCCCAGTCAACACAGTGCAGAGGTCTCCATTTTTCAAAGACATCATTCTGACGGTGGGAGGCTGGACCTTCGCCATCTGGAAGGAAGGAGTCATGATTGGGCCGCTCATGCACTCGGCATGTTCTCAGAAGAAGTGCACCGTGGGAAACTGGTCCCTCTCCCGACCCGGGGTGTTCTTCATCGGGAAGGAGGATGGAAGTATTGAAGTGTGGGATCTAATGGAGAAAAGCCACGAGCCTTCCCAAATCCAGAACATAACCACTGCCTCTATCACCTGCATCAAACCCTGGATTGTCTCTTcgAAGCAGCACCTCCTGGCTGTGTCTGATGAGCTCGGGACCCTGCACATTCTGGAGATCCCATGGACTCTGCACAGCCCCTCCGTCAATGAGTGCTTCAGCACGAGCAAGTACTTTGAGAGAGAAGTCAGCCACCTGGAGTACTTTGAGGAACGGCATGCGTTCAGAGCGAAAGAGAAGAACGACATGGAGGCTGAGGAACAGAGGAGAAAAACGGAACCCATCATCCCTGAGAAAACAGCCAAGCAACTGGAAGAGGAAGTGCTGAAAGAGTATGAGCAGTATCTGGAGCTGGAGAAAAGGATCCTTAAAGAGATGGGGCTTCTtcctgaggaggaggagaaagagaaattACCTGAAATTAACTCTCATTGAAGGCCAgttacataattttaaattggaaattgCTTTATTGGTATGACAGTTATAATACTTCCTTAGGATCAGTTACTTTAAGTGCGCATAGATTATTTTCATGTGATATACCactgttcatattttttattttccacttgtACAGAATATAAGTGGACTTTGTCCCTTTGTAGATG

Function

GO: NA

KEGG:

id description
K24722 DNAI3, WDR63; dynein intermediate chain 3, axonemal

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004882 True 3001 mRNA 0.49 22 7907176 7936127

Neighbor

gene id symbol gene type direction distance location
AMCG00004867 NA coding upstream 36323 7742678 ~ 7870853 (+)
AMCG00004871 NA coding upstream 189698 7701969 ~ 7717478 (+)
AMCG00004869 prkacb coding upstream 240739 7648790 ~ 7666437 (+)
AMCG00004863 adgrl2 coding upstream 688121 7190355 ~ 7219055 (+)
AMCG00004862 adgrl2 coding upstream 728273 7167992 ~ 7178903 (+)
AMCG00004881 cef10,cyr61 coding downstream 156684 8092811 ~ 8094461 (+)
AMCG00004895 NA coding downstream 353101 8289228 ~ 8294685 (+)
AMCG00004896 NA coding downstream 362330 8298457 ~ 8323043 (+)
AMCG00004897 LOC107700566,LOC107710622,LOC107578300,LOC105022607 coding downstream 397644 8333771 ~ 8345890 (+)
AMCG00004891 LOC106598897,LOC106560611,LOC104952770,LOC107694133 coding downstream 523223 8459350 ~ 8468770 (+)
G143923 NA non-coding upstream 32742 7873613 ~ 7874434 (+)
G143772 NA non-coding upstream 1271766 6635058 ~ 6635410 (+)
G143721 NA non-coding upstream 1406455 6500236 ~ 6500721 (+)
G143630 NA non-coding upstream 2445322 5461492 ~ 5461854 (+)
G143526 NA non-coding upstream 3049012 4852163 ~ 4858164 (+)
G143962 NA non-coding downstream 42519 7978646 ~ 8049310 (+)
G143970 NA non-coding downstream 73404 8009531 ~ 8012018 (+)
G143997 NA non-coding downstream 164899 8101026 ~ 8101339 (+)
G144082 NA non-coding downstream 857550 8793677 ~ 8825780 (+)
G144111 NA non-coding downstream 916118 8852245 ~ 8852446 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 173117 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 214815 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 283106 7608901 ~ 7624070 (+)
G143626 NA other upstream 2483055 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 3535087 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 1764040 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 2012283 9948410 ~ 10015424 (+)
G144677 NA other downstream 3726554 11662681 ~ 11663368 (+)
G144940 NA other downstream 4844453 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 6219028 14155155 ~ 14188329 (+)

Expression


Co-expression Network