AMCG00004885


Basic Information

Item Value
gene id AMCG00004885
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7821845 ~ 7830604 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004885
atgtttttgtctCGTCTCCccttccccaccccctcccacaCAGAGACCAGCGAAATATCCAGCAGTTCTACAATGTCTCCCTCGAGGCATCGTACGCAGCCGCCACTGCACTGTTCTTTGCCTTTTTCTAAAAACTCCTACAGTATTTTAAGTGCCTTCTGCACAGAGGACAACATCACTCAGTGCGTTTCCTATGTCAATCAGGAGGTGTCGTCACTGGGCTTCCCTCCTCTGTGTAGCGAATCCAATGGGAAGCGGGACCTGAGCCTGGTGACCGTGCTCAATGTCATGTATGAGCTGTTGCAGCTGCACCGGAGGGGCCTGCGCACCGTGGAGGACCTGGAGACGGAGCAGCTCAAGTCCAGCAGTGACCTGGATCACCTCCAGAGCAGCAACTCCAGGCTGAAGGATCAACTTGAAATATCTAGAAGAGAGAATACAGCACTTCAAGAGAGAGAACGACAGTTACAACTGAAAATGAAGAGCTTGCAGAATAGcctaaaaagtgaaaaagaggagGTACAAAAGCTTCAGAATATAATTGCAAGCCGAGCCACACAATACAACCATGACatgaagaggaaggagagggagtACACAAAGCTGAAGGAGCGCCTGCACCAGCTTTTGATGGACAAAAAGGATAAAAAGTTGGCGATCGAAGTTCTAAATTATGTCGGGAGGTCTGATGGGAAGAGAAGTCTTTGGAAAACTGGGAAGACCGAGGCCAGGAATGAAGGCGAAATGTACAAAACCCTGCTGACTGACTATGAATGTCGACAGAAAGACCTGATGGTGGAAAATGCCGAGCTGAAGAAGGTTCTACAGCAGATGAAAAAAGAGATGGTGTCTATTTTAAGTCCTAAGAAACACAGCCTAAAGGAGGAGAAAATGGAGGACAGTCTAGAACAAGCTGTGTCTGACATTGAGGAAGAGGGTGGAGATCACAGCCGGGAAACTCTGGAGCTGTCGTGCGAGCATGCGAGGGAGCAACTCACCAACAGCATCCGCCAGCAGTGGAGGAGACTCAAGAACCATGTAGAGAAACTGGACAACCAAGCATCTCTGGTGAAGATGGGGACTCGGGTCGATAAGGATGTGATCTCGAGGGAAATACATGAGGAGGAAATGGAGAAGCTGAAACTGGAAATCCAGCAGTGTAGAGACTTCATTCAAAACCAGCAGCAGCTCTGGCAGCAACAGCTGAGCTGCCCCTGTGATGATGAGACGGCCGCTCTGCTACATGACTGCTACCTCCTGGAGGATAAAGAGCGCCTGAAGGAAGAGTGGCGACTCTTTGATGATCAAAGGAAAAACTTTGAAAAAGAGCGGAAGAACTTCACAGAAGCGGCCATTAGATTAGGCCACGAGAGGAAAATATTTGAGGAAGACCGAGCTACATGGTTAAAACATCAGTTTTTAAACATGACTCCATTCGTAGATCGCAAGAGACCCCAATCTTCAAAGTCTCAAAGTGCCTTGTCGATCAGTACAGAACCTGAAGTGAAGAGTGTCCATCACCGAGCACAGCTGACCAAATCAGTCTCCCAGGCTGCTTTCTCTACCCCCAAATCCTCCTCCTCCGCCGCTGCCTCCAAGATGCCATCGACGGGAGACCTGTACCGCACACTGTGCCTCATTCCAGACAGAAGCTCTTCTAGAACGCTACCAAAGAGAGGGAGTTGGCAAGACACCAACAAAATGCACAACAGTGAGGTTTCAATGAAATCGAGACATTCCATAGGATCTGATGACTACAGTATTTATTCACTAGCAGGGGATGAAAATAGCCCAACCTAA

Function

GO: NA

KEGG:

id description
K06085 SSX2IP, ADIP; synovial sarcoma, X breakpoint 2 interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004885 True 1800 mRNA 0.49 12 7821845 7830604

Neighbor

gene id symbol gene type direction distance location
AMCG00004886 NA coding downstream 3156 7800850 ~ 7818689 (-)
AMCG00004874 NA coding downstream 58226 7761827 ~ 7763619 (-)
AMCG00004873 NA coding downstream 80300 7733897 ~ 7741545 (-)
AMCG00004872 NA coding downstream 122530 7689026 ~ 7699315 (-)
AMCG00004875 asf1b,as1la coding downstream 205347 7614353 ~ 7616498 (-)
AMCG00004887 LOC107564930 coding upstream 7326 7837930 ~ 7852819 (-)
AMCG00004884 LOC107715712 coding upstream 32955 7863559 ~ 7871431 (-)
AMCG00004888 NA coding upstream 43889 7874493 ~ 7906563 (-)
AMCG00004883 NA coding upstream 113366 7943970 ~ 7978769 (-)
AMCG00004877 NA coding upstream 164697 7995301 ~ 7998879 (-)
G143860 NA non-coding downstream 95680 7722188 ~ 7726165 (-)
G143859 NA non-coding downstream 100959 7720174 ~ 7720886 (-)
G143857 NA non-coding downstream 103043 7718260 ~ 7718802 (-)
G143853 NA non-coding downstream 111270 7709879 ~ 7710575 (-)
G143839 NA non-coding downstream 197140 7621166 ~ 7624705 (-)
G143922 NA non-coding upstream 26746 7857350 ~ 7858712 (-)
G144072 NA non-coding upstream 696927 8527531 ~ 8528907 (-)
G144124 NA non-coding upstream 1085887 8916491 ~ 8921153 (-)
G144142 NA non-coding upstream 1310015 9140619 ~ 9141972 (-)
G144205 NA non-coding upstream 1586928 9417532 ~ 9418417 (-)
G143659 NA other downstream 2038661 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3705431 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4604616 3120229 ~ 3217229 (-)
G143145 NA other downstream 5111841 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 7175234 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 523385 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1005756 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1042281 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4304774 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4514067 12344671 ~ 12348328 (-)

Expression


Co-expression Network