AMCG00004886


Basic Information

Item Value
gene id AMCG00004886
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 7800850 ~ 7818689 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004886
ATGAAGTTAATCCTTCTAGCACTGACGGTGGCCCTTGTGGATCCCGACTACAGTGGCAGTAAGACCTACGAATATGACTATGAAGGCATCATCCTGGTGGGGCTCCCAGAAAAGGGCCTGGCCAGAGCTGGACTGAAGATCACCTGCAAGGTTGCAATCAGTGGAGTGGCCCAGAGGACCTACATCCTTCAGagAATTTCTACATGGGTACTGAGTGTGGTCCTTTTGTCTCAACAGCTGGCCAACCCTGTGATCAAGGAGTACAATGGTATCTGGCCCAGGGATCAGTTCACCACTGTGAATAGTCTTACACAGGCTCTGGGCAGCCAGCTTCAGATACCAATCAAGTTTGAATACAACAATGGCAACGTAGGACAGATTTTCGCTCCCTCATCCATCTCTGACACTGTACTAAACATCCAGAAAGGCATCCTGAACTTGCTGAATCTCAACATCAAGCAAACTGAAAACGTGTACGAGCTGCAAGAGGCTGGGCTTCAGGGCAGATGCAAGACCAACTACCAGATTAAGGAGGAAACCAAAGGAGAACGCTTATTCATCACCAAGACCAAAGATCTGAACAACTGCGAGGaacagatacagagagacaTTGGCATGGCCTACGCAGAGGAGTACAATGACTACCAGCAGAGAGGACAGAATGTGCAGAGAGCTGCTGCCTACGAATATGTGCTGAAGCCACAAGACTCAGGAGCGCTGATCACTGAAGCCTCAGCCACAGAGGACCACCAGTACACCCCCTTCAATTGGCACAGTGGAGCTGCTCAGATGCAAGCAAGACAGAGGCTGGTTTGGAGCAACACAAGGAACAGCCCAATTAAGGAGCCTGAACTTCAGTTTGAGAAACGTGGCCGTCTACAGTACCAATTTGGGTCTGAAATCCTCCAGACCCCAGTTCAGCTCATTAAGTCCAAGAACCCTGAAACACAGATTGTGGAAACCCTGCACCACCTTGTCCAGAACAATGGGCAGAAGGTTCATGAAGATGCTCCAATGAAGTTCATCGAGCTCATTCAGTTAATGCGTATATCCAGCCAACAGAATATTGATGCCATCTGGAAGCAGTTTGAGAATAGAAAGGAATTCAGGCATTGGATTTTGGATGCTATTCCTGCTATCGGTACAAATGATGCTGTTAAATTTATAAAAGAGAGAATTATTAATAAGCAAATCACAACATATGAAGCTGCTCAGATTCTGATGACTGCAATGCACAGGATGAAACCGGAAACTGCTAACATCCAGATTGCTTCAGAACTGATCAAGCACCACCATATTGCAGACGAACCCATTCTCTTCAAAATTGCCATGCTTGGTTATGGCTCCTTGATTTACAAGTACTGCAAAGAACACGAAAAGTGCCCCGACAACCTGTTACAGCCCATTCACGATTTTGCTGCTGATGCGGTCAGCAAAGCCCATGAAGAGGAGATGGTCCTGGCCCTGAAGGCCATGGGTAATGCAGGACAGCCCTCTAGCATCAAGCGCATCATGAAGTTCCTTCCAAGTTTTGCCTCTGGAGCTTCAGCATTCCCAATCAAAATCCAGGTTGATGCAGTGATGGCCCTGAGGAACATTGCCAAGCTACATCGCAGAAAGGTGCAGGAAGTGGCTCTGCAGCTGTTTAACGATGAAAAGCTCCACCCGGAGGTGCGCATGATGGCCTGTGTGGTTCTGTTTGAGAGCAAGCCCACAGTGGAGCTGGTGATATCTCTTGTCACAGCTCTGCAAAAAGTGAAAAACCTGCAAGTGGCCAGCTTTACCTACTCCCACATGAAGGCTCTGACCAGAAGCATGTCTCCCGACTATGCCCACGTAGCTGCTGCCTGCAATACTGCAGTAAACATGCTGAATGGCAAACTAGGGAGACTGTCTTATCGCTTCAGCAAGGCCTTCCACATAGACACCTTCCAAAGTCGTCTGATGGCTGGGGCTGCTGCTAGTGTTTACGTCATGAATGATGCCGTCAGCCTCCTTCCCAGAGCTTTGGTGTCCAAAATCAGAGGATACTTCACTGGAGCAGCTGCAGACCTTCTGGAGGTACACTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004886 True 2070 mRNA 0.48 13 7800850 7818689

Neighbor

gene id symbol gene type direction distance location
AMCG00004874 NA coding downstream 37231 7761827 ~ 7763619 (-)
AMCG00004873 NA coding downstream 59305 7733897 ~ 7741545 (-)
AMCG00004872 NA coding downstream 101535 7689026 ~ 7699315 (-)
AMCG00004875 asf1b,as1la coding downstream 184352 7614353 ~ 7616498 (-)
AMCG00004865 ttll7 coding downstream 218339 7573191 ~ 7582511 (-)
AMCG00004885 NA coding upstream 3156 7821845 ~ 7830604 (-)
AMCG00004887 LOC107564930 coding upstream 19241 7837930 ~ 7852819 (-)
AMCG00004884 LOC107715712 coding upstream 44870 7863559 ~ 7871431 (-)
AMCG00004888 NA coding upstream 55804 7874493 ~ 7906563 (-)
AMCG00004883 NA coding upstream 125281 7943970 ~ 7978769 (-)
G143860 NA non-coding downstream 74685 7722188 ~ 7726165 (-)
G143859 NA non-coding downstream 79964 7720174 ~ 7720886 (-)
G143857 NA non-coding downstream 82048 7718260 ~ 7718802 (-)
G143853 NA non-coding downstream 90275 7709879 ~ 7710575 (-)
G143839 NA non-coding downstream 176145 7621166 ~ 7624705 (-)
G143922 NA non-coding upstream 38661 7857350 ~ 7858712 (-)
G144072 NA non-coding upstream 708842 8527531 ~ 8528907 (-)
G144124 NA non-coding upstream 1097802 8916491 ~ 8921153 (-)
G144142 NA non-coding upstream 1321930 9140619 ~ 9141972 (-)
G144205 NA non-coding upstream 1598843 9417532 ~ 9418417 (-)
G143659 NA other downstream 2017666 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 3684436 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 4583621 3120229 ~ 3217229 (-)
G143145 NA other downstream 5090846 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 7154239 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 535300 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 1017671 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 1054196 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 4316689 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4525982 12344671 ~ 12348328 (-)

Expression


Co-expression Network