AMCG00004898


Basic Information

Item Value
gene id AMCG00004898
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 8276388 ~ 8289037 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004898
gtgcatgtttatttgtaaaattgttttattttattttattcgaGCTAACTTGAGGATTTGAAAATTGGCACTTTGCTGTAGATTTTCGAAGAATCTGCCTATTGAAAACAGAATTGTGTGCATGAAGTCTCGCTCGATTTCCCCAGTTCATGTCCATATAGAGGACATCACTCCTGTCCATGTCCATGTGCAGAGAAGCCAGTCTTTACCCGCATCCACACAGAAATCTCATGTAGTCAGATTTCCTTCAGCTGACATGGAAAGTGGACgaagaaagaagaaaggcaAAATGGTTTACAGACCCCATAGTCCTGAGAAGTATAAGCCCAAGACAGATATCACAGCCAAACAGGCAGAGAGGATTTGTAGAGTGATCCAGTCAAGTGACTTAGACTTTGAGAGAGACACGGATGTGCCTGCTAAGTGGGATGATGGCCGCTTTGATCGAAGCAATGGAAGCAGAGATGAATTTGCAGGAGGAAGGAAGGATATTTTGTTTGAAGAGAGGTCAGAGGAAATGCTACACGGTTCCCGGAGGAGCGCAGGCGGGCTCTCGCCAGAACTGGTGGACCGCACAGAGGAGCTGGACGAGACCGGCACGAGTGCTGGGCAAACGAGCTCCTACCTGAGAACCACGGACTTGGAGATGGGCAGATTGAGCAATGATGCTGCTCCAGATAAGAAGCTTTTTTTGAAGACCCTCATTGAAGCCGAATCGGCTGCCAATTCTGCAGCTATACAACTTGTGTCTTTTAAGGACACTTTGAGTGACCTCCCAAGTGGTTCGTGTTTTGCTGCTCCGGACAAGTTGACAATGTCACGGCAGAAGAATCTGTTGCTGGAGAAGCTGGAGAATTTTAAAGGCGTGAATAAAGCTCTCCGTCAGCAACTGAAGGAActgcaaaagcaagaaGAAAGCCGTCACCAGGCCGACAGACACATTGATATCTTACTGAAGAAGCTGACGGAGACGGAGACTGAGAATCTGGAGAATTCAGACACAGTGGTGCAGCTCTCGAAGTCCGTGGAAGCGACACGGGCGCACTTACAGGGACGGCTTCGCAGCAAGGAGGCCGAGAATAACCGCTTGGCTGTGCAGTTACGGagtTTGGAAAGGACAATAACTGAACAGAAGTTAGAGATGGAAAACCTGAAGCAACAGATAACCTCCATTGTGGATAAAGCGGGACAAGAGAAAGAGGCGTTGAAGAAAGCCACGAGAGCTCAGAAACAGAGAGCTGAGCGCTTTGAGGCGGCCATCGAAAAATGTTACAGCCAGATGCAAGAGAAGgaTGCGAAGCTAACTGAAAGCCTGTCAGCTGCCAACACATGGAGAAGACATTACGAAGAGCTGACCAAGGAGAAGGCGCAGTTGGAAATCCAGATAGGGACTCTACAGATGCAGATCACAGACTTGGGTGAGCAGCTGCAGAAAGGAAGGGACCATGCCAGAATTTCAAATGAGGAGCTTCTGCACAAAGTAGAGAAACTCCATTCTGAAAATGCAGATGTTAACcttgaaaatgcaaaactgaaggCCACTATATCTGATTTAGAAGAGAAAGTGGCCCATTCGCTGGCTGAGCTCCAAGAACAGACGGCAGTTTCACAACAACAGAAAGACCTGGTTGAGCAGTACAAAACTCAGGTAAAAGAGCTGCAGAAGGAGGCAGACGATCTGAAAACCAGCTTTGAGgcctttttaaaagaaaatcaggtGACACAAGATGGGAAAGAGGCAGAGATAAAAAAGGTAAAAGAGCAGCTGGAGGCTCGGGTGAAGGAGCTGGAAGTTTACCCAGATTTACTGAAGGCAGCCGAGCAAAGGCTGCACGACTGCCAGCAACAGCTCCTGCTCTGCGAGAGAAGATGCTCAGACAAGTCCGCTTCTGTTAGTCAGCAGCAGGTTAAGGTGGACGAACAAACCCAGCAACTGAAATCATCTCTAGATGTGAAGGACTCGCTGCAGGAGGCCAACTTGCAGTTACAGCTCAGAATGGATGCCCTTCAGAGgaAAACCGAAGAAATTGAGTCTGAGAATCGGGAGCTTGTCAGCAAATTGTCAAGCCAGGAAGAGGCTCTCCATTACAGTGGAAAACAGCTGGAGAAGAGGTCTGCCGAGTGCCTGTCTCTGACTCGGCAGCTGGAGGCGGCGCTAGCGGACGTCAGACAGCAGgTTTCCGAAGTGAAGGAGAAGGCCTTTGATAGAGAGAGGGCCCTTCAGAGCAAAATACTTGAGCTGGAAACCGAGAAAAGCAGACGAGACAAGGAGTTGAAACAACTGAGGCAAAGCAAACAATCGGTGGGTACAGGCTGA

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
ko04110 Cell cycle
ko04113 Meiosis - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004898 True 2317 mRNA 0.48 18 8276388 8289037

Neighbor

gene id symbol gene type direction distance location
AMCG00004889 NA coding downstream 63293 8137946 ~ 8213095 (-)
AMCG00004890 NA coding downstream 146101 8106410 ~ 8130287 (-)
AMCG00004878 NA coding downstream 195419 8080417 ~ 8080969 (-)
AMCG00004880 ddah1 coding downstream 247599 8026728 ~ 8028789 (-)
AMCG00004879 ddah1 coding downstream 260685 8011900 ~ 8015703 (-)
AMCG00004899 NA coding upstream 64929 8353966 ~ 8360848 (-)
AMCG00004900 NA coding upstream 78054 8367091 ~ 8373756 (-)
AMCG00004893 gtf2b,LOC107693714,LOC107585659 coding upstream 535833 8824870 ~ 8835400 (-)
AMCG00004901 barhl2,LOC102777546 coding upstream 783303 9072340 ~ 9076086 (-)
AMCG00004902 NA coding upstream 850124 9139161 ~ 9152447 (-)
G143922 NA non-coding downstream 417676 7857350 ~ 7858712 (-)
G143860 NA non-coding downstream 550223 7722188 ~ 7726165 (-)
G143859 NA non-coding downstream 555502 7720174 ~ 7720886 (-)
G143857 NA non-coding downstream 557586 7718260 ~ 7718802 (-)
G143853 NA non-coding downstream 565813 7709879 ~ 7710575 (-)
G144072 NA non-coding upstream 238494 8527531 ~ 8528907 (-)
G144124 NA non-coding upstream 627454 8916491 ~ 8921153 (-)
G144142 NA non-coding upstream 851582 9140619 ~ 9141972 (-)
G144205 NA non-coding upstream 1128495 9417532 ~ 9418417 (-)
G144206 NA non-coding upstream 1131465 9420502 ~ 9420880 (-)
G143659 NA other downstream 2493204 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 4159974 4109082 ~ 4116414 (-)
AMCG00004790 ttc39a,LOC107743871,LOC107548186,LOC107699571 other downstream 5059159 3120229 ~ 3217229 (-)
G143145 NA other downstream 5566384 2709554 ~ 2710004 (-)
AMCG00004763 LOC107393006 other downstream 7629777 644004 ~ 646611 (-)
G144050 selenof,LOC106598901 other upstream 64952 8353989 ~ 8377001 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other upstream 547323 8836360 ~ 8847775 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other upstream 583848 8872885 ~ 8906594 (-)
AMCG00005011 best4,LOC103396708 other upstream 3846341 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 4055634 12344671 ~ 12348328 (-)

Expression


Co-expression Network