AMCG00004901 (barhl2,LOC102777546)


Basic Information

Item Value
gene id AMCG00004901
gene name barhl2,LOC102777546
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9072340 ~ 9076086 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004901
ATGGAAGGATCCAGCGGGTCCAATTTCGGAATAGACACTATCTTATCCAACACGAACAGCTCTGGCAGCCCGGTGCTAATGAACGGGGATTTTCGGCTGGGGGACAGCAGCAGGACGGCGGATTTCAGGAGCCAGGCCACCCCCTCGCCATGCTCGGAGATAGACACCGTGGGAACAGCCCCCTCGTCCCCCATGTCGGTCACCATGGAGCACGCCGAGCAGCACCTGGCCCAAGACAGCCTTCagcatcaccaccaccaccaccaccaccagcagcaAAGTTTGCAGCTCTCGCCTCAACCCCAACAGCAGCTCGGAGCAGCCGGCTCTGCCCCCCCCAGGACTGCCACCTCTTCGTTTCTAATCAAAGACATTTTGGGCGACAGCAAACCCCTGGCAGCCTGTGCGCCTTACAGTACCAGCGTCCCGTCCCCTCATCACACCCCCAAACCGGAGAGCGCCGCGGCCACGGACAGCTTCAGGCCCAAACTGGAGCAGGATGAGCCCAAGAGCAAGCTGGACAAACGAGAGGACATGCAGGGCGACATGAAATGTAACGGCACGAAAGAAGAAGGGGACCGAGAGATCACGAGTAGCAGAGAAAGTCCCCCCGTCCGGTCCAAGAAACCCCGCAAAGCCAGGACGGCCTTTTCCGACCACCAGCTCAACCAGCTGGAGCGCAGCTTCGAGCGCCAGAAGTACCTGAGTGTCCAGGACCGGATGGACCTGGCGGCGGCGCTCAACCTGACCGACACGCAGGTCAAGACCTGGTACCAGAACCGACGGACGAAGTGGAAAAGACAGACCGCTGTGGGATTAGAGCTGTTGGCCGAAGCTGGGAATTATTCCGCCCTACAGAGGATGTTCCCGTCTCCCTATTTCTACCACCCCAGCCTGCTGGGCACCATGGACAGCACGACCGCCGCCGCCGCAGCCGCCGCCATGTACAGCAGCATGTACCGGACCCCGCCGGCGCCGCACCCCGGCCTGCAGCGGCCCCTGGTCCCGCGAGTGCTCATCCACGGCCTGGGCCCGGGGGGACAGCCGGCGCTCAACCCCCTGGCCAACCCCATGCCCGGCACCCCCCATCCC

Function

symbol description
barhl2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; nervous system; neural keel; and neural plate. Human ortholog(s) of this gene implicated in oral squamous cell carcinoma. Orthologous to human BARHL2 (BarH like homeobox 2).

NR:

description
PREDICTED: barH-like 2 homeobox protein

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09360 BARHL; BarH-like

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004901 True 1092 mRNA 0.63 3 9072340 9076086

Neighbor

gene id symbol gene type direction distance location
AMCG00004893 gtf2b,LOC107693714,LOC107585659 coding downstream 236940 8824870 ~ 8835400 (-)
AMCG00004900 NA coding downstream 698584 8367091 ~ 8373756 (-)
AMCG00004899 NA coding downstream 711492 8353966 ~ 8360848 (-)
AMCG00004898 NA coding downstream 783303 8276388 ~ 8289037 (-)
AMCG00004889 NA coding downstream 859245 8137946 ~ 8213095 (-)
AMCG00004902 NA coding upstream 63075 9139161 ~ 9152447 (-)
AMCG00004911 NA coding upstream 149565 9225651 ~ 9268221 (-)
AMCG00004912 NA coding upstream 205108 9281194 ~ 9287486 (-)
AMCG00004916 NA coding upstream 326705 9402791 ~ 9410450 (-)
AMCG00004917 NA coding upstream 356291 9432377 ~ 9457795 (-)
G144124 NA non-coding downstream 151187 8916491 ~ 8921153 (-)
G144072 NA non-coding downstream 543433 8527531 ~ 8528907 (-)
G143922 NA non-coding downstream 1213628 7857350 ~ 7858712 (-)
G143860 NA non-coding downstream 1346175 7722188 ~ 7726165 (-)
G143859 NA non-coding downstream 1351454 7720174 ~ 7720886 (-)
G144142 NA non-coding upstream 64533 9140619 ~ 9141972 (-)
G144205 NA non-coding upstream 341446 9417532 ~ 9418417 (-)
G144206 NA non-coding upstream 344416 9420502 ~ 9420880 (-)
G144208 NA non-coding upstream 363640 9439726 ~ 9440310 (-)
G144209 NA non-coding upstream 365214 9441300 ~ 9442501 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 165746 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 224565 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 695339 8353989 ~ 8377001 (-)
G143659 NA other downstream 3289156 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 4955926 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 3059292 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 3268585 12344671 ~ 12348328 (-)
G145046 NA other upstream 4260123 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 5888328 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 6426996 15503082 ~ 15535145 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location