AMCG00004907 (brd3a,brdt,LOC107686882,LOC107675431)


Basic Information

Item Value
gene id AMCG00004907
gene name brd3a,brdt,LOC107686882,LOC107675431
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9325540 ~ 9343692 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004907
CATCATCATGCCCCCTCCTACCTGGGCGCGCTGTAACAGCCGTACGGTCTGCTATTTCACACCGGACTCAGGAAAAGACCGCAGAGGCCGTGTGCGAGGGGTAGCGCCAGGGCTGACTGTGTGGGGACAATCGCGGTCATGGCGCGGTTATATTTGTGTCGAAGGGCCGCGCCTGGGTATCACATGTGCTGGAAAGGGGAGCTTTATTCGGGAGGCGCGGAAAGTTCTGGAAGGGTCACGTGATCTCGCGAGACTAGTGACGTGATGCGTCCGGACGAGAATATGACGTGAGCgccgttgttgttgttgttgttgttttcgcCCGGGGAGAGCCGCAAGTTTATATTCGCATGTTTCAGACCCGAGGAGGAGGCGGACAGGGAGCCGATGTCGACGACGGAGAAGTTAAACAACGGAGAAagtgaagatttaaaaaaacaaaatacctatAGGGTTTCCGTGAAAAAGGGGCTCTTTTGGAGAAGAGCGGCGAGTGGCGGAACACGTGGAGGGAGCGGGCCAATGGGAGGCCGCGCACCGAGCCGGAGTGTATAAATACCGGGCGGCTGCGGTGGGAGCCGTCCGCCATAGAAgacgaaaaagaaaaaaagactaagaattaagatttaatttcGCATAAAATAGCCTTATCGTCGCCTAACGCACCGACAAGAAACGTCGCTTTTCATCCTCCGTGTTGAACATCTTCGGCACAGACCGTCTGTCTCAGTTCTGCAGTTTATTCAATCTTTGTGCCAGAGAGACGGAaagATAAGAAGGAAGATCTTTTGAGAAATTGAATATGCTGGGAAGGAAGACTATATTCTAATCTCTCAGAAGATGCTGAAACCTCCCAAGATGTCGAGTGTTAAAGGAACAACAAAGACTTTCATTGGAAACCCTCCACCCCCTCAGTATAAAAACCCCAAAAAGCCTGGACGTCTTACCAATCAGCTCCAGTACTTGCAGAAAGTAGTGGTAAAGGCTTTGTGGACACACAACTTTGCATGGCCTTTTCGACAGCCAGTGGATGCTGTGAGGCTAAACCTTCCACCTGGAGATGACATTGTTCTAATGGCACAGGCTTTGGAGAAGCTTTTTCTTCAGAAAGTGGCACAAATGCCACAGGAAGAAGTTGAAATCAGTATGATGATGAACAAGGGAGGAGGAAAAGGAAGGAAGCCTTCAGCAGGTCTGTCCAAGCTGAAGCCTCAGTCTCCGGTCTCTGAAGTTGTGTTTCAGCAGACTGTGACAGTGATTCCTTCAGAGGCCCTCCGTACAATCCCTTCTGCACCTTTAATGTCTGCACATCTGTCATCAAAAGTCAAAAAGggcattaaaagaaaagcagacaCTACGACTCCAACGGCATCAGTCATCACAAGTGGCGAGTCGTCACCTACTCCTACAGAACAGAGGCCgtgcaaattattttcaagaCGAGGAAGCGGTCGGCCTATTAAACCACCAAGAAAAGACCTACCAGACTCCCAGCAGCAACATCAAGTCGGCAAGAAAGCCAAACTGTCAGAGCAGCTGAAATACTGCAATGGGATTCTGAAAGAGatgtttgcaaaaaaacatgcagggTATGCTTGGCCATTTTACAAGCCTGTTGATGCAGCCATATTGGGACTTCATGATTATCACGATATTATCAAACATCCAATGGACCTTAGTACCATAAAAAAAAAGATGGATGAAAGAGTATACAAAGATGTACAGGAATTTGCATCAGATTTTAGGTTAATGTTCTTGAATTGTTACAAATACAACCCCCCAGACCACGAGGTTGTAGCAATGGCAAGAAAAATGCAgGATGTCTTTGAGATGCGCTTTGCTAAGATGCCAGATTTTGAAAGTGTACAGCTGGAGACTCCTGTCCCAGAGAAGAGGGACCCCTCGCCCAGCAGTGATAGCAGCAGCGAGAGCTCCTCCGACTCGGACAGCTCCTCGGACACCGAGGAGGAACGGGTTCAGCGGCTGGCACGGCTGCAAGAGCAGGCATGTGGCACCATGTTTCTAATCGCCCATGGCCATCTTGCCTCATACACTGCATTTGAGTCACTTCTGGAAAGGAGTCTGAAAGAAGTTCGTGAACAATTGCAGATACTTACCCAGGCTCCCTTGCTGAagccaaagaagaagaaagaaaaatctaagaaagagaagaagaaaaaagagagggacaaaaaggaaaaaacaaggaAGAAAGGTGTCGAGGACAAAAGGAAACCGAAATCCAAAGTGCAGAAAAAGTCCAGTAAGGGAGCTCCAGTGGTTCAAAGTAAGAAAAGCAATTTGCCGATCCTGCCGTGTGACTCTGATGAAGAACCTGCAGTCCCGATGACATATGATGAGAAAAGACAGCTGAGTCTTGACATAAACAAGCTTCCTGGTGACAAGCTTGGAAAAGTAGTTAATATAATCCAGTCAAGAGAGCCATCACTGAGAGACTCCAATCCGGAGGAGATAGAAATTGACTTTGAAACGTTAAAACCGTCAACGCTAAGAGCCCTCGAGAGATACGTCATGGGATGTCTTAAGAAAAGACCGAGAAAACCCAACCagaaaaaagCCCCCAAATCCAAGGAGGAGCTGCAGTGTGAGAAAAAGCAGGAGCTTGAGAAGCGCTTACACAATGTCAGTGAGCAGTTGAACTCAGTCAAGAAGACGAAAACTAAGTgtgaAAACACTGATGCCACTCAAGTCCTCGGAGGCCCCTCTCGATTAAGCGATAGCAGCAGCTCCTCAAGCTCTGACACCAGTAGTAGTGATTCTAGCACTTCTGATAGCAGTGACTCTGAATCAGGACAGAAAACGAAAAGGAAGCAAATGAGAACAGATGTCAAAATCGTAACCAAGGAAGGAAAGCAGGCCTCGGCTGCTGTGCGAAATTCTGCTCCCGCAGGTCCAATTGAACCTGCAATTGAGACGAGCTTCCAGCCTGCCATTACGGAGCCTCCATTGCCACAGCTGAACCTGTTTAAGCCTTTGCTGCAAGACCGACTGCATCTACCTAAACAAATCATGGTCTCGCCCCCAGCCTTACACACCCGTCTGCCACCACAGCCATCGAGGCCTAGTGCCAAAGCAGCACCTCTACCTCCTAAACACAGGCCTTCTGCCCAGCAGCCTGACTCAGTCCAGCAACCACAGGCACTTGAAGAGACATTCGGTCAAACCCCGAGCCCCCACTCTCTCTGTCCCGAACACACATTGCCCTCAGAGCCCCCAGATGAGGCCGCTGAGCGACACTCAGATCTCAGTCTGCTCCACTCGGCCGAATTGAACCCCCCGTCACATTCACCTCCACGTGAGCCTGTTCAAATGCGGCACCTCCAGTCTATGCCACAAACACCGGAAGTCCAAGCTGGGCAACCGTTGCTCAGCCGACTACATCTTCTATCCGAGAATCCTCCCACTAGGGTACAAACCGAAGGCATGTCTACACTCTTGTCTCCTTTGAATTCCCCGTCTGTGTTCTCTCGCAGTGTGTCGTCTTCAAATcctgcacacaaacacgcagCCAACGTCACAATGGAGGACATTGTTCTGAAGAATGCTGATTCCTGGGCCAGTTTGGGAAAGATGACGACATTCACTCCATCCATGATCAGATCTTCAAATGAGAGCTTCCAGCAGTTTAGGAAAGCTGCGATGGAGAAGGAGGAGCGCGAGAGGGCCTTGAGGAAGCTGCAGATGGGACAGGCAGGAAGGGAGAAGACAACGGTGGCTGAGAAACCCAGagagcaggacagtgaACCATCTGTAGATATTGTACCGCCTGCTTTGGAAGTGGAACCTCCTAAAGCAGAGGAAACGCCAACAACTACAGAGGCCAAACTACAACAACAGGCCTCCGTGGACCGAGAGCGAGAGATGGCCCGTAAACGAGAGCAGGAGCGCAGGAGGAGGGAGGCTATGTCGGGCATCATTGACATGACTCTGCAGAGTGACATCATGgcaacatttgaaaataatctttatTAATACGAAGCTGGTGGACGGGGGGGAATAACTGGCTGGCATCTTGCATTGTGGGATGCTACTTAGAGCTGTTTATGGCAACAGAAAACGACTTTTTCCAGGCACTGGATGTCTGAGTAATGGATGCTTGTTGAAGGAAACTGGTCATTATTGTCCAAGAAAATGTGCATGACATTGCTTACTATTGTATTATAAAGttattgtaatataatgtacagtGTAATATACTGTGAACCTGTACACACCGACCACATTGAGGCTGGCTCTTGCCTTCTCCTGTACAGGGCATAGTTTAGTGAAGTTATAAAACACTTGCACTCGaggtactgtatgtgtgtttgtatgcagaTGTTGTAGGAGGGTCTGTAAATTAAGAGAGAAGTGTTGTACGTTTGAAACTGACTTTCAGTCCATGTTTTATAATCAGTTCTAGGTATTTTGTTCAGTTAACTAAAAATGGAGGCTGTCACCCATTTACATTCCACTTTTTCTTGCTGTATACCTTCCCAGTTTACAATATTGTTAATGTGTACTTGATTTTCTCCCACCTTAATCTTCCTCCCTGGCGTTTGCTTCTATACTGCTAATTTAGTATTCAAATACAGATGACTATGCTTTGCTGTTCTGACTAAACTTGAATGCCTGTTAATGAAACAGTTTGATTTAATGAGGACTGTCCTCTGCaatattgtttactgtaataCCAGACTCTATATTGAAGTattacttgtttatttgtaataaaataatccttAGCAAATTGTTATCTGGAAGTagcagttaatttgtttttgccaaATGTTGATATTCACAGTTGGGAGTGTATTTTTCAAGGGTACTGTATGCTTCCCCTGTTGGTTTCCCGAAGACTGCAATGCCACAAATTTGATGTGCTTATTTATGAAAATTTAGGTAATCTGTGCCTAAATTCAGACTGGTGTGAGGAAAAGGAAATGATTATACTTTGAATGTGTCTGTTGTTCTCGGCTGcaatttaaatgtcacaatggaAACTTTGAAGTTGTGAAGTttgagattgtttttgttttttacgtCTGCTGTCCTGCATACAGTAGCACTTTCTCTTCTGTATACATTTAAGATGTGAGAGAGCATGACTTGACTATATAGAGagataatatataattttgaagaTAAAAATCACACTATATGGAA

Function

symbol description
brd3a Acts upstream of or within thrombocyte differentiation. Orthologous to human BRD3 (bromodomain containing 3).
brdt Predicted to enable lysine-acetylated histone binding activity. Predicted to be involved in histone displacement; male gamete generation; and regulation of RNA metabolic process. Predicted to act upstream of or within cell differentiation; chromatin organization; and meiotic cell cycle. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in azoospermia; oligospermia; and spermatogenic failure 21. Orthologous to human BRDT (bromodomain testis associated).

NR:

description
bromodomain-containing protein 3 isoform X1

GO:

id name namespace
GO:0001207 histone displacement biological_process
GO:0007283 spermatogenesis biological_process
GO:0051039 positive regulation of transcription involved in meiotic cell cycle biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0007141 male meiosis I biological_process
GO:0005634 nucleus cellular_component
GO:0070577 lysine-acetylated histone binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004907 True 5166 mRNA 0.46 18 9325540 9343692

Neighbor

gene id symbol gene type direction distance location
AMCG00004909 NA coding upstream 114061 9201125 ~ 9211479 (+)
AMCG00004910 NA coding upstream 127364 9149512 ~ 9198176 (+)
AMCG00004904 NA coding upstream 408139 8907831 ~ 8917401 (+)
AMCG00004905 LOC108413222,LOC107749977,LOC107675437,LOC107698886,LOC107564626,LOC107730703 coding upstream 418944 8889969 ~ 8906596 (+)
AMCG00004903 lrrc8c,LOC106560305,LOC106584154,LOC107749978,LOC107593158 coding upstream 445804 8854259 ~ 8879736 (+)
AMCG00004908 ephx4,LOC106584162 coding downstream 3156 9346848 ~ 9355689 (+)
AMCG00004914 NA coding downstream 16208 9359900 ~ 9397437 (+)
AMCG00004915 NA coding downstream 56104 9399796 ~ 9402207 (+)
AMCG00004913 NA coding downstream 68212 9411904 ~ 9418523 (+)
AMCG00004918 LOC103464060,LOC101078338,LOC103368809,LOC106584167,LOC101169281 coding downstream 203536 9547228 ~ 9553629 (+)
G144141 NA non-coding upstream 152391 9172905 ~ 9173149 (+)
G144139 NA non-coding upstream 155291 9169995 ~ 9170249 (+)
G144137 NA non-coding upstream 179687 9145454 ~ 9145853 (+)
G144136 NA non-coding upstream 183636 9140642 ~ 9141904 (+)
G144111 NA non-coding upstream 473094 8852245 ~ 8852446 (+)
G144195 NA non-coding downstream 99964 9443656 ~ 9443894 (+)
G144210 NA non-coding downstream 103897 9447589 ~ 9448533 (+)
G144218 NA non-coding downstream 120449 9464141 ~ 9466613 (+)
G144227 NA non-coding downstream 150804 9494496 ~ 9500978 (+)
G144237 NA non-coding downstream 210408 9554100 ~ 9557475 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1591481 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1633179 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 1701470 7608901 ~ 7624070 (+)
G143626 NA other upstream 3901419 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 4953451 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 356475 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 604718 9948410 ~ 10015424 (+)
G144677 NA other downstream 2318989 11662681 ~ 11663368 (+)
G144940 NA other downstream 3436888 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4811463 14155155 ~ 14188329 (+)

Expression


Co-expression Network