AMCG00004910


Basic Information

Item Value
gene id AMCG00004910
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9149512 ~ 9198176 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004910
ATGACGAGCATCGTAACTCAGCCCCACTCTGTGAAGGTGACCGCGGACATGATTGGACAGACCAACCCCAGACTCAAAAAGTGCAGGACAGTACGGACACGACTTCCTTTCTGCTGTGAAGGGAGACATGTCAAAGTTGGCAAAGGAATCACCATGTGTAGCCAAGctttcaaAGTTTTGCTGGAAttgTACCGAAACGACAAAGACAGCGACGTCCCCATTCGAGGAGTGGAGCAATGCAGCTACACAGGTCAGGCCGTGAAACTACAGCCGCAGTATTCACGCGtcaTACCTATCGATCGTCCTGGTGCGGCCCAGCAGCTGCAGTCGACTCGAATCTGCCCAACTCGAGTCGACTGCGGCTGCGTGGCTTTCTGTTCCTCGGAGGAAAACCACTATGCCAAGAGCAAGGAATCTGGGAACTCGAACCCCCCCCATCAGTTTCACAAATACCAGCTACACAGGAATTGCAGAAGGAATTACAAACTCTTTGCTCTTTTAACTACGTTGGTATCAAAAAGTCACAACCACTACACCAGCATGCAAGGTTTAAAGGAAGGAGCACAGGGTGACCGTTTCCATGCCAGATTCTCGGAAGTGACAGCAGATCCATTCATGACAAGCGGCGATAATGCTCAGGGCCCGACGAGAGGGCCAGCACTGTTCGGTGCGTGCGATTCCTCAACTTCAAAGCATGACCAGAACACAAGAACCGCCCATGTCCTGCCCTTGACTCCACTGCCACTTACCGTCCGAGCAGCACAATTCAGATCTGTCTTTAAAGAATTCCCCTACTTCAACTATATTCAGTCTAAAGCACTTGAGGATCTTCTTTACACTTCAAAAAATGTTGTGGCTGGTGCCCCAACCGGCTCTGGGAAAACGGTCCTTTTTGAACTGGCAATTATTCGATTGCTGATGCAAGTTCCAGCACCATGGTCCAACATTAAGGTTGTGTACATGGCACCAATTAAAGCCCTATGCAGTCAACGTTatgaaaactggaaacaaaaatTTGGGCCTTTAGGGTTGATTTGCAAGGAGCTGACAGGAGATACAGAAATGGATGACTTCTTTGAGATTCAAGATGCTCATCTCATCATGACTACACCAGAAAAATGGGACAGCATGACAAGGAAGTGGAGTGATAATTGTTTGGTCCAGTTGGTTCGACTCTTCCTTATTGATGAGgtCCATGTTGTAAAAGACGCGTGCCGTGGAGCGACCCTTGAGGTTGTAGTGagcagaatgaaaacaaatcattcCTCTCACTCTCGCGGTAAACAAAACCCAGAGTCACACAATGCGATGAGATTTGTGGCTGTTTCTGCAACAATTCCAAATATTGCAGATattgcAGACTGGCTGTCAGATGGTACCGACTCAGCCACTTGTCTGGAAATGGACGAAAGCCACCGGCCCGTAAAGCTAAGGAAAGTAGTCCTTGGATTTCCGTGCTCCAGCAATCAGACAGAGTTTAAATTTGACTTGTCTCTGAATTACAAAATGGCAAATGTCATTCAGACCTATTCTGATCAGAAGCCAACGCTTGTGttttgtgctACAAGAAAGGGAGTGCAGCAGTCCGCATCTGTTCTTGCCAAGGATGCCAGATTTATTGTGAGCATTGAACACAAACAGAGGTTGCTGAAGTATGCAAACTCTATCCTCGACTCAAAACTGAGAGttaCAACAAGCACCTTGGCCATGGGAGTGAATTTACCTGCTCACTTGGTAGTGATAAAATCTACCATGCATTACATAGGAGGAATGTTTCAAGAGTACAGCGACACCGACATCCTGCAAATGATTGGAAGGGCTGGGAGGCCCCAGTTTGAcaccacagcaacagcagtgaTTATGACCAGGTTCCAGACAAAAGACAGATATACTCAGCTTGTAAGTGGGGCTGAAACCATAGAAAGCAGTTTGCACAAACACCTGATTGAACATCTAAATGCAGAGATAGTTCTTCACACCATCTCAGATGTAAATGTCGCACTGGACTGGATACGCTCAACCTTTCTGTACATCAGGGCTCTGAAGAATCCCAGTCATTATGGTTTTCCACCTGGATTAGACAGAGCTGGAATTGAAGCAAAATTGCAAGAGCTTTGTCTGAAGAACCTGAACGCTCTGGCTTCAATCGGTTTGATTGCCATGGATGAAGACATCAATTTCAAGCCAACTGAGACGGGAAAGCTCATGGCACGATACTGCATTGCTTACGACACCATGACACAGTTCAGCACCGTTTCTGGAACAGAAACTTTATCTGAACTGATCATACTGATATCCAAAGGGAAAGAGTTTTCTGACGTGCAGTTAAGAGTGAATGAAAAGAGAACTTTGAACACATTGAACAGAGATAAAAACAGGCAAACGATCAGcTTAATTCAGGCTCAGTTTGGCTGCATCCCAGTTCAAGAATTTGGTTTGACACAGGATACAGGAAAGATATTCAGAAATGGAACCAGAGTtaccaaatGCTTGTCTGAGTTTCTTATCCAGCATGCCAAGACGAACTTTACTGCACTGCTCAACTCATTGATTCTGGCCAAGTGCTTTCGTGCCAAACTGTGGGAAAACTCACAGTTTGTTTCCAAGCAGCTTGAGAAAATAGGATTGACACTGTCAACAGCAATGGTGAATGCTGGTCTCACTTCATTCCACAGGATTGAACAAAGTAATGCAAGGGAGCTGGAACTGatTGTGAACAGACACCCTCCTTTTGGAAACCAGATAAAAGAAGCTGTCATTCACCTTCCAAAGTATGAAGTAAGCCTGGAACAGATCCCAAGATATAGTGTTACGACTGCAGAGGTCATTGTTACAGTAAACCTTACAAACTATGAGCTGCTGATGCTGAGGAGAACGGCTCCAGACAACCATTATGTGACCTTGCTCATAGGGAATTCTGATAATCATGTAGTTTTCCAGCAAAAACTCACTGACTCTCTGTTATTGAGATCTGGAAGCTGGTCAAAGAAAATTGAAGTTACAAGGGCATTAAAAGGCGAAGAACTCAGTGTGAACTTGATTAGTTCTGAATATGTGGGACTTGACATTGTGCATAAATACAGTGCATGGTACTCTGGTCCGAAGCGGTTTGGCACACATATGAGCAGCAGGGAGAATCTGCAGACTGACAGTGTTCCCGCCTCACAGCAGGGAGCGCCCGCACCCTCCACAGTACCCACTTCTCACCAAGGCAAAGTGGGTGTCTCAGTGGCACTGAAAAGTGCTAAACATCCAGAGTCCAGTTTCTCTTCATACCTCAGAGACCTTAAGTGCCGGAATGAAGCTCTTGCAGAGACGCCTGTGAAACGTCTTAAGACCATCACCAGTTCTCGTACAAACAAAAAGACGTCATGCCTGCTTTGGCAAGgTTTTTCGGTCTGGAAACAACCCCATATCCCTCCGAAGAACATTACCACTGTCATCCCAAACAAATCTGCACGTTACTCTGATGAACACAGCTTTGATGCAGATGACAGCGGCTGCTTCTCCTCAGATGCTCTGAATGTGACATTTGATCTTGGGGTGGATGACTGGGATGattttgatgatgataatttGGTGCATGCAAGTGAACTTTCAGTTCAGGAGAGGCCAGcaggtattttttatattaaagagtGTTAG

Function

GO: NA

KEGG:

id description
K15271 HFM1, MER3; ATP-dependent DNA helicase HFM1/MER3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004910 True 3645 mRNA 0.46 32 9149512 9198176

Neighbor

gene id symbol gene type direction distance location
AMCG00004904 NA coding upstream 232111 8907831 ~ 8917401 (+)
AMCG00004905 LOC108413222,LOC107749977,LOC107675437,LOC107698886,LOC107564626,LOC107730703 coding upstream 242916 8889969 ~ 8906596 (+)
AMCG00004903 lrrc8c,LOC106560305,LOC106584154,LOC107749978,LOC107593158 coding upstream 269776 8854259 ~ 8879736 (+)
AMCG00004906 pkn2,LOC107718113 coding upstream 326578 8792926 ~ 8822934 (+)
AMCG00004892 lmo4,lmo4b,LOC107593176 coding upstream 620778 8514010 ~ 8528734 (+)
AMCG00004909 NA coding downstream 2949 9201125 ~ 9211479 (+)
AMCG00004907 brd3a,brdt,LOC107686882,LOC107675431 coding downstream 127364 9325540 ~ 9343692 (+)
AMCG00004908 ephx4,LOC106584162 coding downstream 148672 9346848 ~ 9355689 (+)
AMCG00004914 NA coding downstream 161724 9359900 ~ 9397437 (+)
AMCG00004915 NA coding downstream 201620 9399796 ~ 9402207 (+)
G144137 NA non-coding upstream 3659 9145454 ~ 9145853 (+)
G144136 NA non-coding upstream 7608 9140642 ~ 9141904 (+)
G144111 NA non-coding upstream 297066 8852245 ~ 8852446 (+)
G144082 NA non-coding upstream 323732 8793677 ~ 8825780 (+)
G143997 NA non-coding upstream 1048173 8101026 ~ 8101339 (+)
G144195 NA non-coding downstream 245480 9443656 ~ 9443894 (+)
G144210 NA non-coding downstream 249413 9447589 ~ 9448533 (+)
G144218 NA non-coding downstream 265965 9464141 ~ 9466613 (+)
G144227 NA non-coding downstream 296320 9494496 ~ 9500978 (+)
G144237 NA non-coding downstream 355924 9554100 ~ 9557475 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1415453 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1457151 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 1525442 7608901 ~ 7624070 (+)
G143626 NA other upstream 3725391 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 4777423 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 501991 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 750234 9948410 ~ 10015424 (+)
G144677 NA other downstream 2464505 11662681 ~ 11663368 (+)
G144940 NA other downstream 3582404 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4956979 14155155 ~ 14188329 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_06470183_06483783 HFM1 coding CI01000004 null 6470183 ~ 6483783 (-)