AMCG00004914


Basic Information

Item Value
gene id AMCG00004914
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9359900 ~ 9397437 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004914
AAACCGGCCAGACCAAGCCTCTCCGATGGTGCTTGGGACCGCAGCCTCCTCATGGCTAAAGCAGAAACCACAAAAGAGTTCCAAGCCAAGGAGAGAAAGGCGAAATGGAAACTGAAGAAGTCCCTGGCGTCCGGCTTGTCTGAGGATCTCCACAGGCTGCTCAAGGAGGGCTCTCTGAGTGACGTGACTCTCTGCGTTGGCTCTGTGACGTTCCAGGCCCACAAGGCCATACTCCTGGCCAGGGCACCACACCTGCTGAAGAACTCTGTGGTCAACTCTCATGTCGTCCACCTCGAAGATGTTGAGCCCTCTGAACTGGAGAGCTTTTTACAGCAGGTGTACACAGCAGACACCGATGTGAGCGGTCTTGGGGCGCTTGGTGCAGAAGCAGGAAGGCAAACGGGGCTGGAGTGTCAGGACGAAGCCTGTGGAGAGAATGAGAGGAGATCTGACACCTGCCCTTGGGAAGATCTCCCAGGAGCCAGCTCTCCTTCAGACTCCTCCACCCTGGAGCCGGCGTCCATTCTCGGAGCAGATTTGCTTTCGCTGTACAAGAGTGGCGACTCCTCTGATGTCAGCATTCAGGTTGGGACTCAAATATTCAAAGCTCACAGGGCCATTCTCAGTGTGCGCTCTCACTACTTCTCTGCCATGCTGAGTGGAAACTGGCTGGAAAGCTCCCAGCAGCACATCTCTCTGCACGGCCGGTCACGTAACTTTCTCCTGCACTCTGTCCCCAGTCAGGTGGTGTCGGTGGCTGACATGTACACGCTGGATGGGCTGAGAGATGTAGCCGAGTTTCTGCTGATGAGAGACTACTGCCGATTCTTCCCCAAGAACATCATCAACGTGGTGTCGCTGCTGAAGAAAACTGAGCATCTGATCAGCAGCCTGCCCGAGGTGAAGTGGGCAAAACAGGCTCTGGCCCTGGCCACCGAGCTGCAGGAGGACTGCCTGGCCTTCACTGTGGCCCACTTCCGACAGATGGCAGAATTTGACAGTGAGTCAGATTTGATGAAGAAGATGTTTTTGGCCATTAAGAATGGCATCACCATAGAAAACTGCTGTTCTCTCTTCCTTACTGTGGACACCTTGCTTGGTCTGGAGGTTCCTAATGGCGCCGATTGTACAGAAGAGCAGCAGCATCTAAAATGTCCTCGGGTTCATCCAATTACATCTGAAAATCCAGTGCCGAGGCCTCTGGAGGGGAGGAACCAGCGAGTAGCCTGGAGTCCCTTATCTAGCAAGTCGGAGAAAATGAAGTCTGATGGATTAGGAGCATCTGGTCACActgccactgctgctgccaGGGGGGCCTGTAATAAGGCAGCAGAGCCCGACAGTGTCAGGGGGAAGAATGGCAAAGAGCGGGCCAAAGGGACGAGGGACGTCATACCCAGCGAGAAGAGCCTGCCCACCAAGATGAAGGCAGCCGTCAAGACCAAAGCAGAAGTCAACAGCAACGGCAAAGCAGAGGGACCCGTGCTCAAACGAGATAACGCTCCCTCGGCAACCGTCAACGGCCCGAGAAACGTGCTCGGTTCCAAGGGGGTCCGAGACCAGGACAGGAAAGCCAATTTAGGCGCCAGGCCCAAAGCCCCTTCTGCGTCCCAGACTAAGCTACAGAAGACTGCCTCAGGGAAGAACTCCCCGCTGGGGCACCCAGACAGTCCGCAGCCGAGCCCCCCGGGAACAGCAGGGAAGACTGCCCGGCCCCAGGGCACACAGCCAGCTGGCCAGGGGGACACCAGCAAGGACCCTGGCAGTGAGGTGACATCCGGGAGTGTGTCGCCAGAGAACAGCTCTGGCAGCCCCAAGAACTCAACCCCAGGACACGGGCCAAAGCCTGCCAGCAAGACTGTGAGTCGCCCTGCTGTGAACAAGACTGTGAAAACCGAGCTCACAAAGTCAAACAGTGTCACAAGCAAACCAGGTCTGAAAGAAAGCAGCAAAGCCAAGCCACCCCTCTCGAGCAGAGCTGCAACAGGAGGCACAGGATTGAAAGCTGACGCCAGAGTGAAAAGCGCCCCGGCGGCCACTGGTGAGAACCACGGGCCCAAGtctgcagcagcagtgagctctCGGAAGCCCGCTTCTCCTAGAAAGGAGGATGGCAAGGAAGCTGCGAAGGTGTCAGTGGGAGACAAATCATCCTCTGACGCTTCAGCTGCAGCAACAAAGAGAAAGGCTGGGAAGCACACGAGCGCTGTCAGCGCTGAAGCAAAACCCAACGCCAAACCAACAAAGGCTGCCTCTGCCAGTTCAAAGCAGAGTGCAATAAAGCAGAAAAGTGCTTCCGAACAGCCTGCATTAAAGCCGACTCTGAAATCAATAGGATTGGAAAGAAACGCTCTCTCTGGGCCCAAGAAGCAAGCGTCTAAAGCTAAGGAGGCTTCTAATCAAAAAAGCTGCTCTTCAAAAGGCGCCAGTCCCCAGCGGAACGGCCCTGTATCTGGACCGGAGCTGGGTTCGGAGAGTGCGCAGGCAGAGACGACTCACAGCTCCGCAGAGCAGGACGGCTCCCAGCCATCGCAGTCCACTGACAGAGCGGCGGAAACGGCGGCGCCACCGCTGGCATACCAGCAACCTGACATCATCCACTCCCGGCAAGGTCTCGAAAACAATGACAGGAATTTTATTAGTGCAGCCCTGCCAACAGATGAAGCCAATTCATCTGCTCTTGATAGAACCCGTGATCAATCTGGAATCCAGCTTTCTGTACAGACCCCGGCTGCTGCAGCACAGTCCAGTCAGGAGGGCAAATTATCTGCTAAAGACGGGGCGAGTCCCAGTGCTAATCCGGAGAAAGCTGGGCCGAAGCCTTCACTGCCGGGACAGCCTGGCTTTTCCATCCAGGCACAGAAAGAAGTTGGGAAACCACCCCCTCACATGAGCTCGTCTGCTCTGTGCCCTGCGGTGCCAGCCCGGTCCTGTGCGGGCCAGATGCAAGGACTGAGCTCGCTCAACTCCCCGAAGGATATGGACACCGCGGAGACCCCCGAGGCCAACGAGGATTCGGAAATGCCCCTGGAGGACCCGTGGAACGCGCTGCACCAGAGGGGCAGCCCCGAGTCGGAATCAGGCAGTGCCACCACCTCCTCGGACGACATCAAGCCCCGCTCTGAAGACTACGACGCGGGAGGCTCACAGGATGACGACGGCTCCAACGAGAGGGGAGTGTCCAAGTGCAGCACCATGCTGTGCCACGACTTCCTGGGCCGGAGCAGCAGCGACACGAGCACGCCGGAGGAGCTGAAGATGTACGACAGCGGCCTGAGGATCGAGGTGAGGCTCCGGGGCAGGGAGGTGGCCGATCCCTTCCACGTGCACTCCACCAGCGAGGAAGAGGTGGGCAGGATGCGTGCCAAGACCTGGGACCTGCAAGAGGACGTGCCCATGGAGGAGGAGGCCGGTGAGGAGGAAACCACAGTCACAGTCAAGAATGTCCCCGAGCACCAGATGTCCTCTTCGGAAGAGGAAACGGAGGACGAGCGGTCTGAGGCCGAAATCCCCGAGGAGGTCCTCCCCCCGGCAGACCCATCCCCTCACCAGTTCCAAGGCATCATCAATCTGGCGTTCGAGGATCTTGCGGAACAGGAGAACGACTACCAGTCGGCATCCAACTTCAGACGCTCCGTCCTGCTCTCTGTGGACGAGTGTGAGGAGCTGGGGTCTGAAGAGGGAGGCGGTCAGACACCCCCTCAGCAGTCTGTGGACTCCCTGACCCCCTGTGATGTGTTTGAGTGCGCTTCCAGTGACCCTAAAGCACCCCAGACCACATCCTACTATTCCAGCTGCCCCCTAGAGAACAATGAAGGAATGTCAGACCAGCAGAAAAGCCGCGAAAAGCATCCGTCTCACACTGGTGAAAATAACTGCAGTGGGCAGGGAAATCAAGATGTAGAAACCAAACATACCTTGTTTCTGACTGAAATTGTAGACCCTCTGGAAGAGGAATCAAGATACACTCAGCTGTTACAGGAAAGGGATGATAAAGTGCGAGAAAGATGCAGCCTGCTCCTGGACCCTGACACTAGTGACATTCGCCCCCAGGAGCGGCCGTGCCACCTGGATCTCCAGCAGACCGATCAGTACCGGGACAGTGGGCCACGCAGAAGTGCTGCAGAGCCCGTGGACTGCAAGAAGAGTGACTTGCATCCTAACTTGCATGAACAAGAAGtgaaatcgagctctttggcttCAATCGAGCTCACTGCTACTTCACCAGCAGGGGACTTAGATGATTGTGACAGATTGGATCTAAGCAGCATTTATGAACGACGCCCTTCCAAATCCCTCTCTCCCATTTACGAGATGGACGTTGGGGAGGCCTTTGAGCACGGCTCCGATGCGAACAGGCGCCTGGCAGAGCCGGAACCCGAGCCCGAGGAGGAGGACGAGAACAGTCAGTTTGCAGAAAGGGACTGGACACTCCTGAGACAGCTGCTTTCTGATCAAGAGTCCAGCTTAGGCATCATCAACTCGGTCCCTGAGGATCTGAACCTGGCCCAGTACCTCATAAACCAGACGCTTGCATTGTCGCGCGACTGTCTCAAAGCGCAGGCCAAACTGCCCCTGGAGAAGGACACCTTCAAGAAGTGGGCAGAGCTCATGTCCCCGCTGGACGACTCCACGACGAGCATCACCGTCACCAGCTTCTCCCCCGAAGACGCCGCGTCTCCGCAAGGCGAGTGGACCATAGTTGAACTGGAAACGCATCACTGA

Function

GO: NA

KEGG:

id description
K10480 BTBD8; BTB/POZ domain-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004914 True 4725 mRNA 0.57 13 9359900 9397437

Neighbor

gene id symbol gene type direction distance location
AMCG00004908 ephx4,LOC106584162 coding upstream 4211 9346848 ~ 9355689 (+)
AMCG00004907 brd3a,brdt,LOC107686882,LOC107675431 coding upstream 16208 9325540 ~ 9343692 (+)
AMCG00004909 NA coding upstream 148421 9201125 ~ 9211479 (+)
AMCG00004910 NA coding upstream 161724 9149512 ~ 9198176 (+)
AMCG00004904 NA coding upstream 442499 8907831 ~ 8917401 (+)
AMCG00004915 NA coding downstream 2359 9399796 ~ 9402207 (+)
AMCG00004913 NA coding downstream 14467 9411904 ~ 9418523 (+)
AMCG00004918 LOC103464060,LOC101078338,LOC103368809,LOC106584167,LOC101169281 coding downstream 149791 9547228 ~ 9553629 (+)
AMCG00004926 NA coding downstream 185964 9583401 ~ 9593194 (+)
AMCG00004925 NA coding downstream 196584 9594021 ~ 9618789 (+)
G144141 NA non-coding upstream 186751 9172905 ~ 9173149 (+)
G144139 NA non-coding upstream 189651 9169995 ~ 9170249 (+)
G144137 NA non-coding upstream 214047 9145454 ~ 9145853 (+)
G144136 NA non-coding upstream 217996 9140642 ~ 9141904 (+)
G144111 NA non-coding upstream 507454 8852245 ~ 8852446 (+)
G144195 NA non-coding downstream 46219 9443656 ~ 9443894 (+)
G144210 NA non-coding downstream 50152 9447589 ~ 9448533 (+)
G144218 NA non-coding downstream 66704 9464141 ~ 9466613 (+)
G144227 NA non-coding downstream 97059 9494496 ~ 9500978 (+)
G144237 NA non-coding downstream 156663 9554100 ~ 9557475 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1625841 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1667539 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 1735830 7608901 ~ 7624070 (+)
G143626 NA other upstream 3935779 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 4987811 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 302730 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 550973 9948410 ~ 10015424 (+)
G144677 NA other downstream 2265244 11662681 ~ 11663368 (+)
G144940 NA other downstream 3383143 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4757718 14155155 ~ 14188329 (+)

Expression


Co-expression Network