AMCG00004917


Basic Information

Item Value
gene id AMCG00004917
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9432377 ~ 9457795 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004917
ATCGCCAGCACAACTACGGATGGAGCTTTGCAAATGTAAAACGTTTGGCAAAGTTATCCTCTCTTCCACTTATATATGCTTATGAAACGCGATGCAGAAGTTGTTTCTAACGTTCAGGAAGTTATCTTGCGGTTTTGGGGCTGAACTATTGGAGCTAAAACATTGCAAACTTCAGATGGGACACTCGGGGGACTTCTCGCAACAGTACGTCGTAGCACATTCACTCGCATGTTAGAGGATTCAGGTCTTTAAACCCATCTCTATCACCAGGGACCCCGAAAAACTGGACCAGCAGCCAGATTGAGGAACCGCGAGTGATTTGGGAGTCTATAACGGGAGCGCAGGAGGAAGGATTGACCATGCCGAGGTCCTTTTTGGTGAAGAGCAAGAAGGCTCATAGCTACCATCAGCCAAGGTCCATGGaagatgacaacaacaacaaactagaTAATATTTTAGCTGACATATGTGCAGAAAGTAAGACTCCAGAAGAGGCAGGGTGTTGCTCGGATGCCAGAGGTCGCTTTTCCCCAGAGTCCCACCTCGTAGACACGGCCGACTTGTCCTCCAGGTCTCCGCCGAGCTGCGAGGGCAGTGTCTGCGGGAGGTCCTGCGACTGTGAGGACCTCTGGAGGCCCCCGTCCCCGTCTGCGTCGCCAGACTCGGAGAAGTCCCTGACACCTTCAGTGGACGAGAGCCATCCTTTCTCCATCCCCTTCAGACCTTACGCATGGAGTAGCTACACCAGCTCTGAACTGAGGCACTTGGTGCAGCAGTCCTATCACCACCCCGCGGTACCGCTGGACCGGGGCTCTTCGCTGGGTCTGTACGGGGACAGGGGTGCGGACACCCCCCTCTTCAGCGAGCGCGCCTCGTCGGCGGGCCTGTACCGGGACTACAGCCCTGCAGCGGGGCTCTTTGAGCGCGGATCTGCCCCCGGGGGATACCCCGACCACGGCCTGCACGTCAAGGGCCCCGACATCAAGGCCGAGTCGGACCTGCTCTGCACCCGTCTGCTCTTGAACAACGGCTCGTACAAGTGCATAAAATGCAGTAAGGTGTTCTCCACCCCGCACGGCCTGGAGGTGCACGTCCGCAGGTCCCACAGCGGGACCAGACCCTTCGCCTGTGAGATATGCGGGAAGACCTTTGGCCATGCAGTGAGTCTGGAGCAGCACAAAGCAGTGCATTCCCAGgaAAGGAGTTTTGATTGCAAAATTTGCGGTAAAAGCTTTAAAAGGTCATCGACTCTGTCCACACACTTGCTGATCCACTCCGATACGCGACCTTATCCGTGCCAGTACTGCGGGAAGAGGTTTCATCAGAAGTCGGACATGAAGAAACACACTTTCATCCACACAGCGCTACTGCTGCACCTCCTGCCGGCCGGAGAATTAGTGAAGCATATTGCCATGATGACCCCAGGGACAGCAGGGCGCGTCCGATTGGGATCGGACACACTGCGGGTCGCGGCGTCTGGGGGGCGGCCTGGGGTCCCGCCTGGGGTCCCAGCGGAGCTGCTCACGACTCTGAGCGAGGGGTCAAGGTGCGCCGTGGCAGCCCTGCCCGACAAGCGCATAATTGACTTCACACCAGTAAGCATGGCCTGGAGGCAGGAGACAGACTGGGCTCCGCTCTGCCCCGGCCTTACTGTCCGCTGTAGCTTGTTGTTCAGCCTGGCAGCAGCCATGATCACTGACGGCACTGAAACAAGGCCCATTCCGTGCAAGCTAGCGTCCGACGGCAACACTACACTTTGA

Function

GO:

id name namespace
GO:0007422 peripheral nervous system development biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K09223 GFI1; growth factor independent 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004917 True 1760 mRNA 0.57 10 9432377 9457795

Neighbor

gene id symbol gene type direction distance location
AMCG00004916 NA coding downstream 21927 9402791 ~ 9410450 (-)
AMCG00004912 NA coding downstream 144891 9281194 ~ 9287486 (-)
AMCG00004911 NA coding downstream 164156 9225651 ~ 9268221 (-)
AMCG00004902 NA coding downstream 279930 9139161 ~ 9152447 (-)
AMCG00004901 barhl2,LOC102777546 coding downstream 356291 9072340 ~ 9076086 (-)
AMCG00004920 evi5 coding upstream 19042 9476837 ~ 9515322 (-)
AMCG00004919 NA coding upstream 95270 9553065 ~ 9558253 (-)
AMCG00004922 gadd45a,LOC106568974,LOC107678351,LOC107555372 coding upstream 299432 9757227 ~ 9760024 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding upstream 385123 9842918 ~ 9847710 (-)
AMCG00004933 med8 coding upstream 587421 10045216 ~ 10049989 (-)
G144206 NA non-coding downstream 11497 9420502 ~ 9420880 (-)
G144205 NA non-coding downstream 13960 9417532 ~ 9418417 (-)
G144142 NA non-coding downstream 290405 9140619 ~ 9141972 (-)
G144124 NA non-coding downstream 511224 8916491 ~ 8921153 (-)
G144072 NA non-coding downstream 903470 8527531 ~ 8528907 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding upstream 89408 9547203 ~ 9551306 (-)
G144286 NA non-coding upstream 225257 9683052 ~ 9684119 (-)
G144292 NA non-coding upstream 241519 9699314 ~ 9700409 (-)
G144295 NA non-coding upstream 287074 9744869 ~ 9750778 (-)
G144353 NA non-coding upstream 480185 9937980 ~ 9938611 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 525783 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 584602 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 1055376 8353989 ~ 8377001 (-)
G143659 NA other downstream 3649193 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 5315963 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 2677583 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 2886876 12344671 ~ 12348328 (-)
G145046 NA other upstream 3878414 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 5506619 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 6045287 15503082 ~ 15535145 (-)

Expression


Co-expression Network