AMCG00004919


Basic Information

Item Value
gene id AMCG00004919
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9553065 ~ 9558253 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004919
ATGTTTCTGTCTTTCCTCCGGCATCCAGCGGTGCATGATGGGACGGTGCAGGTGCTTCAGAATTCAGATAAGGCTCGCTTCTCCTACCTGCGCATGAAATATTTCTTCTTCTCGTGGCTGGCGGTGTTCATCGGCAGCTGGGTGGTGTACGTCCAGTACTCCACCTACACCGAGCTGTGCCGGGGCCACGACTGCAAGAACACCATCtgtgataaATACAGGAAGGGGGTGATTGACGGCTCGGCCTGCAGCAGCCTGTGTGACAAGGAGACTCTGTACCTGGGGAAGTGCCTCTCAGCCAAGCCCAACAACCAGGTCAGGACCCTGCTCTCCTTCCATAAGACACCTGAACACGGGGGTACTGAGGTGTACACGGGCAGCTGGGGGGATCTGGAAGGCGTGATCAAGTGTCAGATGGAGGAAATCCTTCGCTACGACCTGGGGGCCGAGATGGAACCCAGGAGGGAAGCTGTGCTGTTTGACAAGCCCACCAAGGGCACGTCTGTGGAGAAGTTCAAAGAGATGGTCTTCAGTCACTTGAAGGCGAAGGTGGGTGGCCAAGCCAACCTGATAGACCTGGTCAGTCTGGTCCTGTCTGTGGCTGATGGGAATAAAGATGGTCACATCTCTCTGCCAGAGGCCAAGTCCACGTGGGCGCTACTGCAGCTCAACGAGTTCCTGCTGATGGTCATCCTACAGGACAAAGAACACACTCCCAAACTCATGGGCTTCTGTGGGGACCTGTACGTGATGGAGAAAGTGCAATATACCTCTTTATATGGGATTCGCGTCCCGTGGCTGATGGAGCTATGGATCCCCTCTGGCGTGCGGCGGGGCATGGACCAGTGGTTCACCCCGTCCTGGCCCAGGAAGGCCAAGATCTCCATCGGGCTGCTGGAGTTCGTGGAAGATGTCTTCCATGGCACCTTCGGGAACTTCCTCATGTGCGACATGAGCGCCAGCAACTTTGGCTACAATGACAAGCACGACCTGAAAATGGTGGACATGAGGAAGATCATCCCTGAGGTGACTTTCAAAGACCTCATCAGAGACCGGCACTGTGAGACAGATGAAGACTGTGTCTACGGTCAGGACTGCAGGACATCCTGCGACCAGACCAAGAAGAGGTGCACCACCGAGGTGATCCAGCCCAATCTGGCCAAGGCCTGCCAGTCCCTGAAGGACTACCTCCTGAGAGGAGCCCCCTCTGAGAtccaggaggagctggagaagcaGCTGTACTCATGCATGGCCCTCAAGGGCACGGCAGACCAGATGGAGATGGAGCACTCCTTGATTCTGAACAACTTGAAAACCTTGCTGTGGAAAAAGATCTCCCACACAAAGGACTCCTAG

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03015 mRNA surveillance pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004919 True 1356 mRNA 0.56 6 9553065 9558253

Neighbor

gene id symbol gene type direction distance location
AMCG00004920 evi5 coding downstream 37743 9476837 ~ 9515322 (-)
AMCG00004917 NA coding downstream 95270 9432377 ~ 9457795 (-)
AMCG00004916 NA coding downstream 142615 9402791 ~ 9410450 (-)
AMCG00004912 NA coding downstream 265579 9281194 ~ 9287486 (-)
AMCG00004911 NA coding downstream 284844 9225651 ~ 9268221 (-)
AMCG00004922 gadd45a,LOC106568974,LOC107678351,LOC107555372 coding upstream 198974 9757227 ~ 9760024 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding upstream 284665 9842918 ~ 9847710 (-)
AMCG00004933 med8 coding upstream 486963 10045216 ~ 10049989 (-)
AMCG00004937 NA coding upstream 556745 10114998 ~ 10123827 (-)
AMCG00004942 NA coding upstream 1336685 10894938 ~ 10896806 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding downstream 1759 9547203 ~ 9551306 (-)
G144209 NA non-coding downstream 110564 9441300 ~ 9442501 (-)
G144208 NA non-coding downstream 112755 9439726 ~ 9440310 (-)
G144206 NA non-coding downstream 132185 9420502 ~ 9420880 (-)
G144205 NA non-coding downstream 134648 9417532 ~ 9418417 (-)
G144286 NA non-coding upstream 124799 9683052 ~ 9684119 (-)
G144292 NA non-coding upstream 141061 9699314 ~ 9700409 (-)
G144295 NA non-coding upstream 186616 9744869 ~ 9750778 (-)
G144353 NA non-coding upstream 379727 9937980 ~ 9938611 (-)
G144502 NA non-coding upstream 1397832 10956085 ~ 10958001 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 646471 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 705290 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 1176064 8353989 ~ 8377001 (-)
G143659 NA other downstream 3769881 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 5436651 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 2577125 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 2786418 12344671 ~ 12348328 (-)
G145046 NA other upstream 3777956 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 5406161 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 5944829 15503082 ~ 15535145 (-)

Expression


Co-expression Network