AMCG00004922 (gadd45a,LOC106568974,LOC107678351,LOC107555372)


Basic Information

Item Value
gene id AMCG00004922
gene name gadd45a,LOC106568974,LOC107678351,LOC107555372
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9757227 ~ 9760024 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004922
GGACGGTAGGTGCGGAGAGGTGCACATGTATTGGGAGCGCTGAGCCGGTAACATACGGAAGCCGAGAGGGTGCATTGGACCGGTGCTGTGGATAAAAACCTGAGTGGGGGAGTTATTTATGTATACTGAATTGCGCTGCCAGGAGGGAATACTGGGCCGTATTACGTGCAACATGACTTTTGAGGAGCTGAGTGGAGATCACGCTGCAGAAAGGATGGATTCGGTGGGAAAAGCCCTGGAAGAGGTCCTGTACAGCGCCTTACCGCAAGGCTGCATCACGGTGGGAGTTTATGAAGCTGCCAAGTCGCTCAATGTAGACCCGGATAACGCGGTGTTGTGTCTGCTGGCCACGGACGAGGAGGATGTCAAGGACGTGGCCCTTCAGATCCACTTCACTCTGATCCAGGCCTTCTGCTGCGAGAATGACATCAGCATCCTGAGGGTGAACAACATGGCCCGTCTGGCGGAGATCCTGGCAGGGGTGAAACAGGGAGGAGAACCTATGGACCTCCACTGCGTGTTGATCACTAACCCAAACTCATCTACTTGGAAAGATCCGGCCCTGAGCAAAGTCAACGGGTTCTGCAGAGAAAGTCGTTGTATGGATCAGTGGGTGCCTGTAATTAACCTCCCCGAGCGATGAAGACGGAGGCGaggactttgttttttttttcggtgTATTGCACTGGATTTGCGTAACGCTCTGGCGGATATCTCGGGCAAAAAAATCCTTCTTGCTgatgaagaaacaaacaactttaaaaaaataaaaaggacagtCTGATCGGAAGGGGGTGGAGTTCAGTCCAACAGGAGGAGTTCTTGCCCTGAGGAAGGGTGACTCAGCAGTTTGTGAAGAAAGTTgactgggaggaaaaaaaaaagtgttgttcaCGCTGTTCTGCAGCAGAGCCTTCAAATGAAATGGATCATGTGGGGGCATATCAGCATTTACAAGAAAGGGATCTGAAACCACATCAGTCTGGTTCTGAACTGGATGGGCACAAGGACTGCACAGTTAATGATTTCAGGAGCTGAAACCGAAACAAGGGGTGTTTTGAGATTCTGTACTATTTTTAGTATTACTTTTATCATTTCTATTGCTGTTGTTGCAACTATTTAAAAGGGAAGGGCTGGAAGTCCAAATGTAGGAAAAGCAAtatgtttgatattttttaattcgTTTGAAAGAGAAactgttcttttttgttgtcattaagttatttttttgaCTTGTATTAACTTAACTTGTAtttatgttgctgtttttaccaaccacacacaacctGTAAAGAACTGGTACAACTGTATTctgttgaataaaatgtttgaacCAGATGTAAA

Function

symbol description
gadd45a Enables kinase binding activity; protein N-terminus binding activity; and protein dimerization activity. Involved in several processes, including cellular response to mechanical stimulus; negative regulation of protein phosphorylation; and positive regulation of stress-activated MAPK cascade. Located in cytoplasm and nuclear speck.

NR:

description
PREDICTED: growth arrest and DNA damage-inducible protein GADD45 alpha-like isoform X1

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004922 True 1344 mRNA 0.46 4 9757227 9760024

Neighbor

gene id symbol gene type direction distance location
AMCG00004919 NA coding downstream 198974 9553065 ~ 9558253 (-)
AMCG00004920 evi5 coding downstream 241905 9476837 ~ 9515322 (-)
AMCG00004917 NA coding downstream 299432 9432377 ~ 9457795 (-)
AMCG00004916 NA coding downstream 346777 9402791 ~ 9410450 (-)
AMCG00004912 NA coding downstream 469741 9281194 ~ 9287486 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding upstream 82894 9842918 ~ 9847710 (-)
AMCG00004933 med8 coding upstream 285192 10045216 ~ 10049989 (-)
AMCG00004937 NA coding upstream 354974 10114998 ~ 10123827 (-)
AMCG00004942 NA coding upstream 1134914 10894938 ~ 10896806 (-)
AMCG00004954 NA coding upstream 1190251 10950275 ~ 10955865 (-)
G144295 NA non-coding downstream 6449 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 56818 9699314 ~ 9700409 (-)
G144286 NA non-coding downstream 73108 9683052 ~ 9684119 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding downstream 205921 9547203 ~ 9551306 (-)
G144209 NA non-coding downstream 314726 9441300 ~ 9442501 (-)
G144353 NA non-coding upstream 177956 9937980 ~ 9938611 (-)
G144502 NA non-coding upstream 1196061 10956085 ~ 10958001 (-)
G144587 NA non-coding upstream 1493591 11253615 ~ 11254574 (-)
G144612 fubp1 non-coding upstream 1559102 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 1562559 11322583 ~ 11328481 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 850633 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 909452 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 1380226 8353989 ~ 8377001 (-)
G143659 NA other downstream 3974043 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 5640813 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 2375354 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 2584647 12344671 ~ 12348328 (-)
G145046 NA other upstream 3576185 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 5204390 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 5743058 15503082 ~ 15535145 (-)

Expression


Co-expression Network