AMCG00004925


Basic Information

Item Value
gene id AMCG00004925
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9594021 ~ 9618789 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004925
CCGGAAGTGATTTACACCAGCCCTTTAAACGGAATTATTAATATGTGAACCTGTTGATCAAAGTgtgcatgcattttattcaacAATCTATACAGCTCAGTTTGGGTTTGTATCAAGTGGACAATATTGTGCAAGTTTCGAGTTTGTGGAAGATGTTcacttgtttcatttattttcacagttgcACAATAATTGTACAAACTATATTGTAACTACATTGACATCCTTTGCCAGGGCATGAGCCTTTAGCAGTGTCAGTCATCCATGTTTCACAACACCGAAGAAAACCTTGTTGCAAATGTGGTTGCTTTAAGGAATGAGCTGAGGAGAACTGAAACAAACCTACAGAGTTTGGGGGAAGATCTGAGTGATGTCCCCGGTGCCGTCTCGAACTGCAGCTCTCATTCTGCGTTCCCAGTGGTGTTAACGCTAGAAGATCTCCAGCAGCCTGATGAGACGCCGCCTTTGCCAGGCAACCCCCGCCTTGCATCGACCTCTAAGACGATGGCTGAACGCAGAGTTCTCTCCTGTAGCAATGGAGCCAGCCGGGATTCCCGATCCCTTTCAGGTTCCTCTTCCTTGGCCCGGCAGGTTGAGATGGAGAACACCCTGCTCAGGAGAAAGCTCAGCACCATCCAGGAGGAAAACGTTGCGTTGGCTACAGAGAATCGCCAGTTAACCAGAGAGCTGGACTTGGTGCAGGCCGAACTCACCAACTCTAAAACCAAGATCCGCTATCTGGAGTCTACCATGGGATCCAAGGCCTCAAGTGTCCCAGTCCTGAAGGAGCAGCTCCGTGATCTGGAGGCAGAATTTGAAGTCCATGAAAATGCCTTGAGAGATGCTGAGCAGAGACTGGAGCAGAGCCAGCAGTCGTCCCTCTTCATGGAGAGAGTGCAAAGAAATGAAGCCCTTCTTAATGCTGAGAAACTGACAGGAGCTTTTCaggaatataaagaaaatgtttctgaaaaactgaagaaGATCCTGGAGGGTGAGGAGAAGCTGAAACAGAGCCTGGTGCAGTGCGACCGGGAGCGAGACGCCCTGCAAAGCCAGTGCTCTCAGCTGGAGCGGGACAGGGACGACCTGACGCAACAGTTGAGGCGGCTCCAGGAAGGAGCCAGTCGAGCACAGGTGATGCAGAACGATCTGGCAGCCGAGAAGCAAGACCTTCTGTACCTCCTGGAAGAGTCCAAGCAGAAGGTGTCGAAGCTGGAGAGAGAGCTGGCGGACAAGGAGGCTTTTCAGACCGAGAGGGATTCTTTGCAGAGGGAGAACAGTGACCTGAGGTCCCTCACAACCTGCCAGAGTCAGAGACTGGAGCAGTGCCAGAGAGACGTGGAGCAGACCCGGGCAGAACTGGCCAGCCTGGAGTCCATCCTGGCTCAGCTGCAGCCTACAGAGGATGCAGGTGGAGTGACCAGTTCCATGATAGACAGCCCAGCCCAGTCTGAGTCCTCCGAAGGATACCTGAGGGAACATCAGGCCCAGTGTCAGGACCTCAGGTTGCAGCTGTCCCTGAAGGAAGCCGAGGTCCAGAGActgcaggcccagctgacctccgGCCTGACCGCTCCGCACCTTCCTCAGAGAGATCTCCTGCCCGGAGAGGGGCCGTACCAGCAGCTGCTGCCCGTGCTGAGGGCTCTGCAGCAGGAGAAGGGCAGGCAGGCGGCGGAGGTGAAGAGACTGCAGGAGCGGCTGGCCAAGGCGCAGGCCCAGATCTCCTCTCTGCAGTCCTGTATGGACCAGCGCGCCCGCCACTTCCAGCACATCCACGACGAGCTGCTGGGCAAGGCTGCCCACGCCACCACGCTGGAGAAAGAGCTGAAGAAGAAGAGCGCTCGTTTGGCAGCCTTGGAGAGGCAGCTGCAGGAGAAGACTTCTGCATATTCTGCGGCTGCTGTGAGGAACACAGACCTGGAGCAGGACCTGCTGGAAAAGAGCAACAGTCTTCAGCGCCTGGAAAATTCTCTCAACAAAAAGCAGAAGGATTTCCGTCTGAGACTCGAGAAGACCGAAAAAGTTCATGCCCAGCAAAATAAAGAACTGGAGGACCAAATTAAATTGCTGCAGCTTGCTGGGGAGCAGAAGCAGGCCCAGCTGAGGGAGCTGGACAAGAGCCTGGCGTCGGTGCTGCAGGACAGAGAGGAGGCCCAGCGCCACACGCACAGCCTGCAGGCCGCACTGGCACAGCTGCAGCAGGTGAAGTGTCTTGAGACCGCACTAGCAACGTGCAAGGAGGAAATAAGCCTCCTTCTGCAGCACATGGCGGAGAGCGAGGAGCAGTTCCAGAAACGGCTGGAGATGAAGTCCAAAGAGGTGGAGGCCTTGCAGGTGGAGCTGAGGGCCCGTGTGTTGAGTCTGCAGGACAGCAcccagcacagccagcagctccagcacagcctgcagcagcagcaggggaTGCTCCAGCAGAGCACAGCCCGCGTGGCAGAGCTGGAGGACAGCCAGACCCGGCTCCAGACACAGCTGGAGAAACAGAAGGCCGCTGCGGCCCAGGAGCTGCTGTCCCTGGAGGAGAAGCTGCGCGATGCCTGTGTGCAGAGCGAACACAAAGACCAACACGCAGCACAGCTGAACAACACTGTCACGCGACTGACCGCAGAGATGAGCGATTGCAGAGAGGAGCTGAGTGACCTGGAGAAGGAGCTGCTCAAACTGCGCCGAGACAGCAGCACCAAGGCCTCCCAGCTCAGCTGCCTGGAGCTCACCCTGCAGGAGACACAGGGACAGCTGGAAAAGAAGTCCGACCTGGTGATGGACCTGGAAGAGAAGCTCCACCGCAGCGAGGCCGACCGGCGCAACTCCCTGCAACGCACGCAGCTCCTGGAGGACCAGCTGCAGACGGTGCGCGGCGAGCTCGTGGACACGCTCGGGCACCTGCAGGAGCTGCGCAACGTGCTACAGAAGACGCAGCTCTCCGCCGAGGAGAAAGAGGCCTTCATTGAGAAGCTGGCCAGCGAGCTCAGGGAGTGCAAGGGGGAGCTGGAGGAACGCAACAACGAGCTGCTGGACATGGATTCGGCCCTGAAGGAGAGACAGTGGGAGCTGCAGCAAAGAGCCTCCCAGCTCAGCCAGCTTGAAGTGACCGTCCGCGAGCACAAGACCGATATGGAGCAGAAGATCGTACGGCTAGAGGGGGCGCTGGAGAAGTCACAGCGGGATGTTGAGGAGCGAGATAAGAGAGTGCAGTTCCTGAGTGGGAGGCTGGAGCTGATGAAGACACAGCTGCAGGAAAAGGAGAACATTGAAAGGGAGGCCGTCTCTCAGGGCCAGCAGGTGAGGCTGGGCAGGGAGCAGCTGCAACGCTCTGTCCAGGAGCTGCAGGACACACGCAGACAGGTGGACCGGCTGACCCAAGACTTGGACCACAGCACCCAGCTCAACCATGACCAGGAGGCCCGGATCAACCGGCTGGCTGAGGAGCTGGGGGCTGCCCAGGCCAGGGCGGCACAGGCCGAGGCCAGACTGCAGGAGCGGGTGAGGACTCTGCAGGAGGAGATGGAGCAGCTAAAGCAAGCCCACCACCGAGAGCTCATAGGCCTTCAGGAGAGCCAGGCGCATTTACTGGAGACCACGGGTTCCATCTCGGACAGTCTGCAGAGCTCTCGGGAGCATCTGCGTGAGCAGCTGCGTCACATCGAGGCCGAGCTGGATGAATCCAAGGGCAGCCTTGCTTCCCTGCAGGCAGAGCTCGCAGTCCGGGACCAAGTCATCCAGGCTGCTAACGAAGCCCTGCTCATTAAAGATGCAGAAGTTGCGAGACTCGAGGCCAAGATCTCGAGCCACGAGAGAGCAGTGGAGCTCCAGTCCGTGTCCCTTCGCTCTGCCCTGCCCCTTGCTGGCAGTGACGCCCCGGGCAGAGACTCCACCTTGCACGTCCGCCACAGCCCATCTGCCCACAGGGACCGGCATCGTTCCCTCAACGCTGCAGACACTGTCCCTGACTGGATCATTGCCGACTCGCTGGAACTCCCCAGGAATGTGGCTGAACATCTCAAGCTCTCCGTGGCACCACTGGCGGGCAAAGAGCAGAGCTGGGGCTGCGGCAGCGAGATCGACTCAGTTTCTTCAGAGTCTTCGTTCAACCCCCTCACCTACGTGGTGAGAGACGAATCCACCATGGATACCAGCTACCCAGAGTCTCAGAAGCCTGACCTGGACACCTTCAGTGGGATGTTGCAGTTTGTCAACCAGCAGATTGGCAGGAGAGAAGAGCCCCCAACTCAGAGAGGAGGCAGCGATCCAGAACTCAAACAAAAATCCCCAAATGTCACATCAGAGGACCTCTATTTCAGATCCTTAGAAAATCGTCCATCTTTCTAGAGATGTCTCTCTCCCACCCTGGTAAGAAAGGCTCCATATGAGAAAATGGCATGTCAGTTGAATGGATCAGTCTACCTGTCAGATGTGAACACATGAAACGGCACTTTCTGAACTCCCCATGAACCCTCACATCAGTGGTCAGGATTCAGTTGAAGAACTGCCTCTACAGCAGTGAACAGCATTTGAAATTAGACTGATAACTAGTGCTACTACCTTTACAGCTGATTGTAcatgtgtgtgaaatgtatttatatatttgtaggaatgtattttgttaaattatttttttaattgtgaagtCATTTCTTTATActttattaataaatgatttATTCTGTACAA

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004925 True 4692 mRNA 0.56 28 9594021 9618789

Neighbor

gene id symbol gene type direction distance location
AMCG00004926 NA coding upstream 827 9583401 ~ 9593194 (+)
AMCG00004918 LOC103464060,LOC101078338,LOC103368809,LOC106584167,LOC101169281 coding upstream 40392 9547228 ~ 9553629 (+)
AMCG00004913 NA coding upstream 175498 9411904 ~ 9418523 (+)
AMCG00004915 NA coding upstream 191814 9399796 ~ 9402207 (+)
AMCG00004914 NA coding upstream 196584 9359900 ~ 9397437 (+)
AMCG00004927 NA coding downstream 14048 9632837 ~ 9646412 (+)
AMCG00004928 LOC103368644,LOC107091536,LOC106920129,LOC103463988,LOC103139842 coding downstream 28677 9647466 ~ 9651063 (+)
AMCG00004923 dr1,nc2b coding downstream 34795 9653584 ~ 9658003 (+)
AMCG00004924 wls coding downstream 44534 9663323 ~ 9684123 (+)
AMCG00004929 diras2,LOC107560410,LOC107736992,LOC107670053,LOC107702570 coding downstream 66728 9685517 ~ 9688791 (+)
G144237 NA non-coding upstream 36546 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 93043 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 127408 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 145488 9447589 ~ 9448533 (+)
G144195 NA non-coding upstream 150127 9443656 ~ 9443894 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding downstream 224640 9843429 ~ 9847756 (+)
G144512 NA non-coding downstream 1377593 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 1516968 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 1579524 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 1625813 11244602 ~ 11247808 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1859962 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1901660 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 1969951 7608901 ~ 7624070 (+)
G143626 NA other upstream 4169900 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 5221932 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 81378 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 329621 9948410 ~ 10015424 (+)
G144677 NA other downstream 2043892 11662681 ~ 11663368 (+)
G144940 NA other downstream 3161791 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4536366 14155155 ~ 14188329 (+)

Expression


Co-expression Network