AMCG00004927


Basic Information

Item Value
gene id AMCG00004927
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9632837 ~ 9646412 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004927
tgcctcctcctcctcctcctcctcctgccagTGCACCGCTCCGCTCCCAGCaactacagcacacacacaACAATGGTGGTCCACAAAGAGTTCCAGACGGCAGGGAAGGCGCCCGGCCTGCAGATCTGGAGAATTGAGAACATGGACTTGAAGCCTGTGCCCAAGGGTCTCTATGGCAGCTTCTACACTGGAGATGCCTACATCCTGCTCTACACCACCGCCGCCCCCTCTTACAACCTCCACATGTGGCTGGGAAATGAGTGCTCTCAGGATGAAAGTGGTGCTGCTGCCATCTTCGCCACACAACTGGATGATTTCTTGGGGGGCAAACCAGTGCAGTTCCGTGAGACCCAGGACAACGAGTCTCACACTTTCACAGGTTACTTCAAGTCTGGCATTCAGTACAAGAAAGGCGGTGTGGCTTCCGGGTTCAAGCACGTGGTGACCAACGACATGAACGTGAAGCGGCTGCTGCACATCAAGGGCAGGCGGGCCATCAGGGCCACCGAGGTGGACATGTCCTGGAACAACTTTAACAAGGGAGACTGCTTCATTGTTGATCTGGGGCAGTTCATCTACCAGTGGTGTGGAAGCGAGTGCAATCGCTTTGAGCGTTTGAAAGCTTCTGAAGTAGCCATCGGCATCCGAGACAACGAAAGGAACGGCCGTGCCAAAATCTCTATGGTCGAGGAAGGGAGTGAGCCACAGGAAATCATTGACgTTCTGGGTCCAAAATCTGCAATCGCACCAGCAACCCCTGATGATGAAGCGGTCgagatttcaaacaaaagaaaagcagctCTTTACCTGATTTCTGATGCCTCTGGCTCAATGAAGTCATCCCAGGTGGCCGAGTCCAGCCCCTTCAAGCAGGCCATGCTGGCACCCAACGACTGCTTCATCCTGGACAACGGAGTAGATAACAAGATATTTTTGTGGAAAGGACCAGGTGCAAGCACAGAAGAACGCAAGGCAGCAATGAAGACAGCTGAGCAGTTCATCAAGTCGAAAAATTACTCCACAAAGACTCAAATCCAGGTTATACCAGCAGGGGGTGAAACAACTCTCTTCAAGCAGTTCTTCTCTGACTGGAAAGACAAGGATCAGACGACTGGCCCCTCTCAGGCCTACACTATCGGCAAGATCGCCAAGGTGCCGCAGATCCCCTTCGATGCCTCCTCCCTGCACTCCAACCATGCCATGGCCGCCCAGCACAGCATGGTGGATGATGGCTCCGGCAAAGTCCAGATCTGGCGTGTTGAAGGTGGCGAGAAGGTCGCTGTGGATCCTGCCACTTATGGTCAGTTCTATGGGGGTGACTGTTACCTCATCCTGTACAGCTACAAGACCAGCGGCAGAGAGAAGCACATCATCTACACCTGGCAGGGACAGAAGAGCACCCAGGATGAGCTGGCAGCTTCAGCCTTCCTCACGGTGAAGCTGGACGACTCCATGGGAGGATCCCCAGTGCAGgTGAAGCCCTCAGCCTCTTCTCTGAACACCAATGATGTGTTTGTGCTGAAAACCGCGGCCGACACGTATGTCTGGAAGGGAGTGGGAGCCTCTGATGAGGAGGTGGCCATGGCCAAGCATGTGGTCAGTGTGCTGGGAGGAAGTCCTAGCGATGTTTCAGAGGGGAAGGAGCCAgCGGCTTTCTGGACTGCTCTCGGTGGCAAGAAGGAATACCAGACATCCCGCACCCTGCAGAAGACCGTGAAGCCACCTCGCCTGTTTGGCTGCTCAAACAAAACTGGGCGCCTTATTGCGGAGCAGGTGCCAGGAGAATTCACCCAGTCTGATCTCGCCACTGATGATGTCATGTTGCTGGATACCTGGGACCAGaTCTTCCTGTGGATTGGCAATGATGCCAATGACGTAGAGAAGACTGGAGCTCCAAAAATAGCTCAAGAATACATTAACTCAGACCCTTCTGGACGAAAGGGAATCCCCATTACAACCATCAAGCAGGGCAACGAGCCGCCCACATTCACCGGCTGGTTCATGGCCTGGGACCCCACCATGTGGGACACTGACCCCCTGGACAGGATCAGGGCTCGATTCTAAACCTCCGCTGCCTGCACATCGCAGTACAGCCATGTCCCACAATGCACGGCTTCTCTGGACAACAGTTCATGTAGTTTTATTACCCCAATTAGGCACTTTGCCCGCTTACTGAAAATATTTGCCATCTAACCCTATTCATAAAGTCTACAAGCATCCCTATGAAGTGCCTTACTATAATGCTTTGGGTGTATGGGAAACCACTTACTGAAAATTGTTTGCTCGCCTGCTTCCTGTCCAGCTGTACACTTCTTTTTTTCCACTcatgttgttattaatattttttttttactggaggtTGCCAAATGGAATAGATCCTGTTGCTTGACATCCGCATGTCATGTTTGCCAATACTTTTTCCACAGGAACCCTGGATATAATGGCATAGGCACATTGGGAAGCAGGTTCATTTTGGGAACTGACCAAAAAACTTGCCCTTTCTCTTATTCCAGATTACACAACTGATGGTGcatgtgttaaatgtatgtaatcAGCAGACAGCAATGGTTATATTTGCTGGCACAGCATTCTAACtacagttttctttatttcggGTGTCTACATAATGTAATGATGGTTACTTTGTAATAAACAGCATTGT

Function

GO: NA

KEGG:

id description
K05768 GSN; gelsolin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004927 True 2662 mRNA 0.51 16 9632837 9646412

Neighbor

gene id symbol gene type direction distance location
AMCG00004925 NA coding upstream 14048 9594021 ~ 9618789 (+)
AMCG00004926 NA coding upstream 39643 9583401 ~ 9593194 (+)
AMCG00004918 LOC103464060,LOC101078338,LOC103368809,LOC106584167,LOC101169281 coding upstream 79208 9547228 ~ 9553629 (+)
AMCG00004913 NA coding upstream 214314 9411904 ~ 9418523 (+)
AMCG00004915 NA coding upstream 230630 9399796 ~ 9402207 (+)
AMCG00004928 LOC103368644,LOC107091536,LOC106920129,LOC103463988,LOC103139842 coding downstream 1054 9647466 ~ 9651063 (+)
AMCG00004923 dr1,nc2b coding downstream 7172 9653584 ~ 9658003 (+)
AMCG00004924 wls coding downstream 16911 9663323 ~ 9684123 (+)
AMCG00004929 diras2,LOC107560410,LOC107736992,LOC107670053,LOC107702570 coding downstream 39105 9685517 ~ 9688791 (+)
AMCG00004930 NA coding downstream 117107 9763519 ~ 9779724 (+)
G144237 NA non-coding upstream 75362 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 131859 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 166224 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 184304 9447589 ~ 9448533 (+)
G144195 NA non-coding upstream 188943 9443656 ~ 9443894 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding downstream 197017 9843429 ~ 9847756 (+)
G144512 NA non-coding downstream 1349970 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 1489345 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 1551901 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 1598190 11244602 ~ 11247808 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 1898778 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 1940476 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 2008767 7608901 ~ 7624070 (+)
G143626 NA other upstream 4208716 5423703 ~ 5424121 (+)
G143471 LOC107575789 other upstream 5260748 4371709 ~ 4372089 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other downstream 53755 9700167 ~ 9750777 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 301998 9948410 ~ 10015424 (+)
G144677 NA other downstream 2016269 11662681 ~ 11663368 (+)
G144940 NA other downstream 3134168 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4508743 14155155 ~ 14188329 (+)

Expression


Co-expression Network