AMCG00004930


Basic Information

Item Value
gene id AMCG00004930
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 9763519 ~ 9779724 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004930
GTCATACGTGGCAAGGATGTGCTTAGATTCAGAAAGAGCACAGAACTGTACTTGGATACTGTaacattgataataataataattataaatacagcagGAAATAAGGTCCTCCGACGAAAAAGaagacattcaaataaaatgtagaaaaatCAGGGGAGGAGATGGCCTGACTTGATGGGATTTATGAAATGATTAAATCAAAGATGACAAACCGCTTCGGAAGGGAAACAGCTATGGCCTTTATCATACAGAGGAGAGGAAAAGGTGCTCACTTTAAGCCTTGTCCCTTCTGTGGAGAATAAATGGGTCTtggaaaatactgaaaacagaTAAGGGAGGGAAAACAGGATGGATCCCAGAGGCTATCCGTATGGGCCTGAACCTGCAGCCCCCCAATATTACCCCCAGAGACCTGCTTCCAGAGCAGATTACCCCGACAGAGATGCCTATTACAGCAGCAGGCCTGGCCACTATGGGGACATGTACTACCCCCATCCGGACTCCAGAGAGAAGCACTGGACACCAGCCGACCACAGGCCGAGACCCCATGTTACCAGCCCTCCGCCCCGAACTGATGTCACCCCCGTTTACCAGAGCAACCCTGTGTTTAGAGCAGGCTACGGCCCAGACCAGCCACTTGGCCTAGCACATTCCAGACATGGTTACGACTACCCTCGTCAGAACTACCCTGCTTGGGACCCCAGAGAGGATTATGGGTACTATGATCGAGGCTACCACAAAGGGCACCGCCGACACCCGGAGGCTGACAGATGGACTCCCAATATCCCTCAGCAAGATTACTGGAGGCAACCTCCTTCCCAGGACAGAAGATATGAGCAGGACTGGGCCAGTCCTCATTACATAGAGCCTCAATCCAAAAGatATGACCCGTTTTCAGAAAGTTCTCAGTATGACTATGGCACTCAGGCGAACTTCCAGAGTCCCAATGGAGACAGCGCGCAGGAGAACGGAGATAGCTTCGCAGAGCTATCCCTATATGAATCAGGAGGCCTCGCTCGCGCTAAGGCTTCTGGGTTGTCGTCGAGCGGCTATGAGCTCAGCCAGTACATCGACAGCACCGAGCCGAGCGACCTGCCCCCACAGTCTCTCTGGAGCTCTGCTTACACAGAGAGTGCAGAGGTCCCTCAGCTCGCTGCCCCCCTGAAGTTCTCCCTCCCTCACGTGCGGGTGGGATTCGGGCCGGGGGGCCAGCTGCTCCGGGTCAGCCCCAGCCTGCCCACACAGGGGGAGCCGGCGCTGGTGGAGATCCACAGTCTGGAGGTCATCCTTGTTGACACTCGGGAACAGGAGGAAGTTCGAGCCTTCCCGGGACCTCTGACCAGGGAAGATCTCCACAAGGTGGACGCAATAAGCTTTGCCCAAAACCGTGCAGACCGCTGCTTGACAGATGAGGCCCTGCAAGACAAGGCCTCTGCTGCCCTCCTGTGGAATCTGCTTGTACTGTTGTGTCGGCAGAACGGAAGGATCGTGGGCTCAGATATTGCCGAGCAGCTGCTGAGAGATCACCGGGCTCCGGGGCAGTGTGCGGGGGAGCTGGGGGATCCGGGCACTGCGAGTCTCATAGATCTTAGTGAAGAGGGCACTGTGATGGGCGGCAGCCTGGATACCACTGACCTGCTGACTGGGGAGATCACACACGGCACAGAGTCCCGCGAAGAGGCCCTGGGAAAGTACACCAAGCTCCTGCTCTCCGGGAGGAAGAAGGAAGCCCTGGAGGCGGCGATGGGAAGTGGTTTGTGGGGGCATGCTTTATTCCTGGCCAGTAAAATGGACAACCGGTCTTACACTACAGTGTTAAACAGGTTTACAGGCTCTTTGGCTGTCAATGATCCTCTGCAAACGCTATTTCAGTTGCTGTCGGGGAGGATTCCTGCTGTGTCTACGtgctgtgggAGTGAGAGATGGGGTGACTGGAAACCTCACCTGGCTGTGATCCTCTCTAACCCGACCGGAGACGTGGAACTGAACCAGAGAGCAATCACCACCATGGGCGACACGCTGGCCACAAGAGGACTGATAGATGCTGCCCATGTTTGCTACCTAATGGCACGTGTTCCCTTCGGTGTTTACACTGTAAAGTCCGAGAAGCTAGTTCTTCTGGGTAGTAACCATTGCTTGCCCTTCCTGCAATTCACTAAAAATGCTGCTATCCAGTGCACAGAAGTGTTTGAGTACTGCCAGCTATTGGGTGACCCTTTTTTCTTAATTCCCTCCTTCCAGgtGTACAAATTCATCTACGCGTGCCGCCTGCTGGACTATGGGCTGGCGTCCCAGGCCTTCCATTACTGTGAGGTGATTGGGAAGGCCTTACTCAAGCAGGATGTCCTCCCTGCTGTGTTGGTGGGGGAGCTCATCAAGTTGGCACAGAGACTGAAGCTCTCGGACCCCTTGTTCAGTGACGGGGCAGTGGAGGGGCAGACTGGGGACCCCAAGTGGCTGGCACAACTGCAGCTGAGACACCTCAACCCACAGatGGGGAACAATGGCTGGTGTAACAGAGACCAACCACCTGCTGATGAAAGAACTGCCCCACAGGAAGAGAATGGAATAAGCACAGACCATACTGTGCGTGACCAGATGTTCCTGACAGGAGCGATGACACCTGAGCTGCCAAGGCCTGGGCCAGATGTGCAATACCTGCAGCCTCTCACAGTGGCTGATGGACATTGGCAGCAGCCTCCTCCCCCCTGGACTCAGGAGTACCCAGCCGACCCTCCCCAGACCGCTGCAGCGCCCAGCCCGCCAGGAGCTCATGGGTACCCCTTCCAGGTCCCAGATGCCACATATCCACACACCTCCGCGCTGGACTCAATCTCTTCTGACCAGTGGCCTCAAGGTATTGAAATGCAGTCAGGAAATATGACGAGTGACATGCATGTGAGCCAGGCAGGACCAGACCCTGATGGGCAGAGTGAGGCCAGACTCCAAACAGCTGTGGAGCAACACGGTGGAAAACCGCAAGAGCAGGGCAAGTCTGAGGATaACGCTAAATCTGGCTGGTTTGGCTGGTTTAAGTCCAAACCTGCAGCCAAGACAGAGAATAAAGAATCCAGAAAGGATGACCTAAAAGACACTGATAATGTCAGCTGGCAGGACACCTCTGCCCCGCCCCTGCTCTCTCCTCCACCACGTCCTCCTGCACTTTCTCAGGCTGCaggccccccaccccctcagcCAGGGGTCAACCCCTTCTCCAGATGGGCTGGTCCACCAGAACTAGGTTGCTCAGGACTAACAGAAAATGATGACCTGAAAGATTTTAATACCTAGAGATGGAATTTGATCTTCTCAAGGAACCTCAAAGGACCTCACTTATAAACACTGTCCTGACTTCAACCCTGGAGCAATATTATCTTCTAAGAACAGCCGAGTGACCTCCTGCAGACACATGCAGTATTTCTTATACACATCCACACAGTCCTTCTGACTGGGGTTGCTGGCAACCCAAAAGTATAGCATTTGAATATccactttaattaatttttagaaaaaaacaacaacaaagaaaacaaatcttgcACTTGGTAgttgtttaaatatgaaaactgaTATCACTttctgtaattgtaatgtaGCTGAATGTGACACAAGAGGACTTGGTACACATCAATGCAGGTTTCTATGCACtgcttccattttgttttgtatcaggGAATAACAGCTCAGTTATCACACAACTGTGTCACAACATTTCACAACATTGCTGTAAGGTTGTAGTTTGTATGTGGCCGACATATGGTTGTAACATACAGCGTTTTTGACTAGTGAAGTTGCAGAAACATAAGAGCCTTATTTTGTTCTGACAGTGTTGTACTGATGTATCTTGGTGTCTAGACATTTATGTTGtccaaatgtaattttacataaaCAGAAGGTTGTGCCAGCCTGATCACAGTGTtcaattgtaatttaattgtaatgatcCCTCAGGTCTGTGGAGATCTCAGACAGCGTCATGCACACCCTTTTATAGAAACCGTGACGTGTTGTCTGAGATCAGCACTGTTTGAAAcagaacacaaatggaaattgggcttcaaggcatgcaagacagaaaacaggagacgttTCTGcacacagaggcgtcacaatctgaacaaactccccagcgatgtggctgaagctgaaaatttgggaacatttaaaaacagactggataggatccttggatcacttcattattaatggacaccagatgAGCACGATgaggcgaatggcctcctttcgtttgtaaactttcttatgtttttataaaccCACAGTCTAGTCATTATTGAAGTTCTCACTTGCACTAGTGTTTATTCATCTGGAAATGTATACGTCTGTACTGCCATTTATCTTGAATCGTATTTGTACGATGAAATGCTGACCAGCTGTGGTCTCCAGTCTTGGTCATTCAGATTTCATTTGTCTTCTAGCAGTTGCTGACAAACTGGTCGCTGAATGATTAATTATGCTAACAGACGGTCAAAGTAAGTAAGGACACACTTATTTGGAATGAAACCCTGAAGCTCTCTAGGACTAGTGCTCGAGACCCCTTTTGGACAGTTATGTTATGCTGTTCTGACCTATTCTGACcattaaaacataaactgtTAAACAATTCTTTAGTTGCACTCATCTGAATCAAATGGTGTATCTCCATGATTGTATAAGTGCAAAAAAATGGTAAAAAGGTACTCAAAATCTACTGCGACAATGACAGTGTTATATACGTGTATAGTTCTTGACAATCAGCATGTACCAGAAGTATATTGCCAAGCTAAAACTAGAAAGTATTTAAGTGAacttttttaagataaaaaaatgtatatgtataacatacacacacagctgtgtatcTGGAtatcagtttatttgttttgaacattAAGGGAGTAGCAAGTACTTCCGGTTGCTTTCTGCattgattttggtttatttacctaattgtattcaattaacacttttttatttgttgggACATTAATGATCAAGTTTATATATAAGTTCAATATGAAACAGTGTTATGTATAATTAtgtgttgcctttttttttgtacagattGGTCTGAtagattattttactaaatCAAAGCCCTTTTAATTATGCCAAAGTACTTTCTGATTAGCAAATCTCCTTTTACCATTACTCGGCAGATGCTTGCATTGCTTCTGGCAGGTTTATTCTGGAGGGGTTTGGCAGAGTTTGCAGCATGTTGGCTAATACCCAGCTCTGTGCCCGCAGCCTCTCACATTATAGTCCTATTAGCAGGATTCAATTTCCTTCGCCTGAAACGACGCTGACATTCAGCACTTAttaattgtgaaaaacatgttttttccaaTGTATTCTGaagtttttttaagttttttattattttcagaaaacagatattcaagctttttaaaaatgtaataaatcatacatttaagaCATTTATGTGGTTTACCTAgacaaaaatgacatttatacaaTCAGTGTTGGTGATTCCTGTgttgtcctttaaaaaataaaaaaggttttatattggcctaaatgtatttacaaaaaaatattatatttgaaaaaattaCTGATGGACTTGCAGAAACACATATTCTGACCTGACCACTTTTCAACTGTCTAAcccatttatttgtaattttctgaAATCTTACCCGATGAGATACTGGATCCAGATTTGGAAACCCGGCCTCTTGAGCCTGTGTATTATCCCATTAaatttgcttatttaatttctgtctttTAATGTGCTATTTTGTAAGAGAAACTTGAAAACCTTCAATAAATTATCTTGGGAATAATa

Function

GO: NA

KEGG:

id description
K20353 SEC16; COPII coat assembly protein SEC16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004930 True 5809 mRNA 0.46 25 9763519 9779724

Neighbor

gene id symbol gene type direction distance location
AMCG00004929 diras2,LOC107560410,LOC107736992,LOC107670053,LOC107702570 coding upstream 74728 9685517 ~ 9688791 (+)
AMCG00004924 wls coding upstream 79396 9663323 ~ 9684123 (+)
AMCG00004923 dr1,nc2b coding upstream 105516 9653584 ~ 9658003 (+)
AMCG00004928 LOC103368644,LOC107091536,LOC106920129,LOC103463988,LOC103139842 coding upstream 112456 9647466 ~ 9651063 (+)
AMCG00004927 NA coding upstream 117107 9632837 ~ 9646412 (+)
AMCG00004932 NA coding downstream 68860 9848584 ~ 9888182 (+)
AMCG00004936 NA coding downstream 158697 9938421 ~ 9941239 (+)
AMCG00004934 NA coding downstream 270334 10050058 ~ 10116505 (+)
AMCG00004945 ptprf coding downstream 825923 10605647 ~ 10607897 (+)
AMCG00004943 LOC107743377 coding downstream 873866 10653590 ~ 10663952 (+)
G144237 NA non-coding upstream 206044 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 262541 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 296906 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 314986 9447589 ~ 9448533 (+)
G144195 NA non-coding upstream 319625 9443656 ~ 9443894 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding downstream 63705 9843429 ~ 9847756 (+)
G144512 NA non-coding downstream 1216658 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 1356033 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 1418589 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 1464878 11244602 ~ 11247808 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 12742 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 2029460 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 2071158 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 2139449 7608901 ~ 7624070 (+)
G143626 NA other upstream 4339398 5423703 ~ 5424121 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other downstream 168686 9948410 ~ 10015424 (+)
G144677 NA other downstream 1882957 11662681 ~ 11663368 (+)
G144940 NA other downstream 3000856 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 4375431 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 5599875 15379599 ~ 15384811 (+)

Expression


Co-expression Network