AMCG00004937


Basic Information

Item Value
gene id AMCG00004937
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10114998 ~ 10123827 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004937
CTGGCCAGGCACTCAATAGGATTACCTCTGACTGTCATCCAAAATCAATGTCCTGTCGATGCAACATGAAAGGGACACTTAAGCCTTATTTAGAAGAAAGGAGACATGGACAGAGCTGGATTAGCATATGTAGGTATGTCTGACACCCTCACCGCGGCCTGCTCACTTCTGCGCAGGCGTGGGAAGTTATTGTGGGACGGAGGGAGAGTAACAGGTCCTATTCTGCAATTAAAGCTACTGGACACGGCGATATACACCCCCTAGCAAACAAATACTGGACTGAAACACATTGTTTGCTAGTCAGATCACCTGGCTGGACTTTGTGACACGGAAACAAAGtccagtgtttgtgttgctgtttgaGGCACTCCGAGTCTGCGCTTCACCCGGAATAATATCGACATTCCCTCCATTGATTTCGCCCCAgtcattattcattcattattcaatattatttcctTGCCAGCGGAGGTGCAGCGTTTCCCGATGTCCCGGCTCAAGTTCAGCGCTAACCTGTCGTGGCTGTTCACGGAGCGGCCCGAGTTCACGCAGCGGCTCCAGGGCGCAGCGGCGGCCGGGTTTCGAGCCGTGGAGGCGGCGTGGCTGTACGACGCGGACCCGCTGGCGCTCCAGGAAGCCCAGCGACAGGCGGGGGTGGAAGTTGTGCTCATTAACACGCCGCCCGTGTCTGCTTGTTTCCTCAGGATCCACCTGATGGCCGGGAGGGTACCTGCAGGGCGGGACCGAGCGGCGGCTAGTGAGGAGATGGAGGCCACATTTGTAGAGAACCTGAAATACGCTGCTGGTGTTCTGTCAAAGGAAGGGATTCTCGGCCTGCTGGAGCCGATCAACACCAGGATTACAGACCCCCGATATTTCCTGAACACGCCACACCAGGGTCATATTCAGATTGCGCAGGTTCCCCATCGCAATGAGCCAGACAGCCCAGGGGAAGTGAACTTTCCCTACGTCTTCAATCTGCTAGAGGAAATGGGCTACCAGGGCTACATTGGATGTGAATACAGACCCCTGGGTGCTACAGAGGAGGGTCTCGGGTGGTTGCAGGACTACTGGAAGGATAACAAATGAAGGCAGGTGATGGGCTTTCACTGAAGACAAACAGTGAGGCCATTGCAAGACGGACACTAAAACCAACTAAAGAAAACTGTTTTCTGAGTGTGGATAAAGAGGTAATCCAGAAACAGATACACCTGGGGACTATGAATTCTTGGGGGAGATGGAactaacaaaaaagaaaaactatgcAGCTTTAAACTGACTTCTGTCCAAtccagaaataatacaaatgtttgcaAGAGTAATACCAGGAGGCAGTGTCTAATGTGGAGAGATGTGGATTAAAGTTGCTGATGCACACAAGATACATATTTAACACTGGGCCCGATCCTGATAATAGAGGTTGGATACGGTGTTTGCTACAGGAAGGAAGCCTCAGAGATAACATGtaacacaacagcacagacaTTAGCAGTGCAGAGGAAGCTGTAACCTTGGGAGATGCAGATAAGCCAGGCTGCTGCTGAGCCTGAAGAAAGGGATCGACTAACAGAGGCGCCCGGCTTAATTAAAGCGGCGCCAACTCCTGCTTTTGTTGGTGGACAATGCGCTTCCTGTACCGAGATTTGAAATGTCTTCCATACTGGAAATCTGGTTATAGTCACCGCCTAAAACTTCTCCAGCACCGTCTCCCACCAGAACTACACACGTGCTGTCCAATCTGAACACATGATCTCTCCGGGGCTGTTGTAGAATAagatgtttgattttattccatttgaaaggaaacaatcggTCTCAAGGTCTTTCATATTCTTGTTAgagctttttaaattgtgcgTGGAGAAAGTTTCAAAGCTCTTTCTACTCCTCATATGGTCTTTATCtgttatacattataaattatactgtacagagttgtacattttcttaacaAGGAGTCtgttgaaaatgaaaggaaaggaaaagattTTTGTCCCCTTGGctcagcaaaaaataaaagaataaatgcaCTGGCCCATGAAGTTGTGCAGTATGCAACCGATAACAGTTGTAATcaattaaatagtttaaaaagaaagattaatttagttttcataCAGATTACTGTGTGCTAATGTTTTATTAGCGACTCACATAATGCCTTGTTACCCACTGGCATGTCTCATTAGTGCATATGTTGTAGATTTGCCTGTCTTTTACTCTCAATTTAGGTTTGACACATCCTTCCAGCAGCTATTTTAGATGGAACTGGTGcttaaaatatgacaatatCAGCAGAAATAACTGAAACATCACACAGaacttacatttttaacaagatCAAAGGGAAAAGGCTGATACATAGTACTCtttcaacacaattataaactACTCCATTGAATAAATGTACTTACAGCAACCATATTTCCATTCTCTAATCTTACTAAGCTGTTTTTTATTCCCCAATTAATTTTTCTGTAAGGATTTTAACAGCTTAATCTAAGGGGCCCATGCAAACTTGGCACCAGGCATCATCTAAAGTCACATTAGCACTGAAGAATGCTGACCCCTGTTGGTACAACAAGGGCACTGACTGGCCTATTGATTTGCTGCCAGTTATTTCACCCCtttacaaaaaaaggaaaatcaatattttaatataatgcaaagtttttattttatacttacaatttgtatatacataatGTACATATTGAACAAGGTCAGACACTCAGTCACTCCAATCATAAGCTTACATATGCATAACTAAAACTCAGAaagttgcatttttaaagacatgAATAGTTAGACCTTATTAAATACCCAGTGTTCTTCACTTGAAAATGAACTGCAAAGGAAGGAGACCATTGTCTTGCTTACACACATGATTAAAGCCTCTCCTTGCCTTTATCCTTTTTAATTAGGAGTGTGCAGAATGCTGAGATATTTGGTTTCCTTCTCGATACATAGACGTGAAATATTAAGGCCGTTTGCTTCCTAGGTCGTGCCATGACGTCTTTTGAGCCGAGCAGAATTGTGTGCGTTTATTGCACCCATGTGGTGGATGAGAGCGTGTGACGGGACATAAGTGAAACCTGCATCACGTGTCCGAAGCCGTTCCTGTAGAATACTAAACACCATCGCCTGTGACGCCCTCGACTGAATTAATCGGCAGTTTAATTGGGTTTTCAAAGCTCTCTCTCCCAAGGTCAATATAGTAATACTGTCTCCCAATGCATTGTTAAAAACGTAGGCACTTTTGGAATTAAGTTGTTGGCTGTCAGGAAATTAGGTAACACACAGTTGAAATGATAAAAGTATGAAAAATTTATAACTTTAAAGCTCTCGGCTTTAACAGGCAGCGAACATTCACATTTACTAAACATTTAGACCTGCCAGGTGAAatctaatttctttattttctggttACAGAGCTTCATTTTTCATTCCTCCAGTGTGGGTTCTGTGCAGCACACCAcgattaatattttaaaacgttCCTCCAGTGTCATGATGTACAGTATTGACGGAATCTAAAAGTTCAGCCGTTTCATCCAGGTGTTGTATAGATTTGTGGAACGAGTGCATAATTCTGTTGGCGGttgaggacttttttttttttcttctgagatTTCACAGCATAGCTTTAGCGATTTAATACGAGTGCTTCTCTCCAAACACAAAATTACCAATTTTCAAGCAGCAGACGTGTGACAGGCCTTATAGTAACCTTCTCCATAAAGAAGCAGGTGCGTTTAAAGGGCTCACTGCGTAAATATTTTAGCATTGTGTCCTATATTCTGCTCTCTACAAATTCACTTCACACTAAGGAGCTCCATCAGTCAGTACATCCCTCTGAGGTAGTATACATCTCATATAGCGCCTCTGTCTTTGTAAAGTGCCCTTGCTCCAGAGAAATGCCCTCTTCACACACATGCTGTAGGTGTCCTCCGTCCTGGGTGGCAAGAGGCACTTTCACAGGACACGGGCAGGCATGCTCTCTGTCATCTCTATTTGTACAGTGTATCTTCCTGTATGGCACAAAAACTAATCTCCAGTTTTTGCCccctttttttcctcattttcaGGCATAGgaggaacattttgaaaaagttaaattaacattgattaaaataataataataattcttcaAGATCAG

Function

GO: NA

KEGG:

id description
K01816 hyi, gip; hydroxypyruvate isomerase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004937 True 4160 mRNA 0.43 5 10114998 10123827

Neighbor

gene id symbol gene type direction distance location
AMCG00004933 med8 coding downstream 65009 10045216 ~ 10049989 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding downstream 267288 9842918 ~ 9847710 (-)
AMCG00004922 gadd45a,LOC106568974,LOC107678351,LOC107555372 coding downstream 354974 9757227 ~ 9760024 (-)
AMCG00004919 NA coding downstream 556745 9553065 ~ 9558253 (-)
AMCG00004920 evi5 coding downstream 599676 9476837 ~ 9515322 (-)
AMCG00004942 NA coding upstream 771111 10894938 ~ 10896806 (-)
AMCG00004954 NA coding upstream 826448 10950275 ~ 10955865 (-)
AMCG00004956 NA coding upstream 868858 10992685 ~ 10994644 (-)
AMCG00004955 dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107684938 coding upstream 899791 11023618 ~ 11026477 (-)
AMCG00004947 NA coding upstream 980737 11104564 ~ 11105115 (-)
G144353 NA non-coding downstream 176387 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 364220 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 414589 9699314 ~ 9700409 (-)
G144286 NA non-coding downstream 430879 9683052 ~ 9684119 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding downstream 563692 9547203 ~ 9551306 (-)
G144502 NA non-coding upstream 832258 10956085 ~ 10958001 (-)
G144587 NA non-coding upstream 1129788 11253615 ~ 11254574 (-)
G144612 fubp1 non-coding upstream 1195299 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 1198756 11322583 ~ 11328481 (-)
G144657 NA non-coding upstream 1375345 11499172 ~ 11501075 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 1208404 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 1267223 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 1737997 8353989 ~ 8377001 (-)
G143659 NA other downstream 4331814 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 5998584 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 2011551 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 2220844 12344671 ~ 12348328 (-)
G145046 NA other upstream 3212382 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 4840587 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 5379255 15503082 ~ 15535145 (-)

Expression


Co-expression Network