AMCG00004938 (LOC106598945)


Basic Information

Item Value
gene id AMCG00004938
gene name LOC106598945
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10838986 ~ 10841454 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004938
CGTGGCACGGAGGGCTTCTGGAAATCTGTGGCTCAGCACGTCCCGAAAGAGCCCAGCGAGATGCGCATCCTCAATCCCTATTTCATCCAGGAAGCTGCTTTCCAGTTCATTGGGTTGCCCCTAAACAATGGCCTCATGGGGAAAGGGAATATCCCAACTCTTGGAACCGTTGCAATAACAATGGCTCTTCATAATTGTGATGAGGTAGCTGTGGCCGGATTTGGGTATGACATGAATGCTCCCCACGCCCCACTGCACTACTACGAGACTGTGAAGATGTCTGCTATTAAAGAG

Function

NR:

description
PREDICTED: CMP-N-acetylneuraminate-beta-1,4-galactoside alpha-2,3-sialyltransferase-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004938 True 294 mRNA 0.51 2 10838986 10841454

Neighbor

gene id symbol gene type direction distance location
AMCG00004939 st3gal3b coding upstream 16114 10818400 ~ 10822872 (+)
AMCG00004941 NA coding upstream 40185 10776248 ~ 10798801 (+)
AMCG00004946 kdm4a,LOC108280529 coding upstream 98733 10727154 ~ 10740253 (+)
AMCG00004944 NA coding upstream 122786 10676345 ~ 10716200 (+)
AMCG00004943 LOC107743377 coding upstream 175034 10653590 ~ 10663952 (+)
AMCG00004940 NA coding downstream 36473 10877927 ~ 10880307 (+)
AMCG00004951 pif1,LOC104945614,LOC107700539 coding downstream 90439 10931893 ~ 10940644 (+)
AMCG00004952 rad54l coding downstream 101795 10943249 ~ 10950084 (+)
AMCG00004953 LOC107672656,LOC107393234 coding downstream 114782 10956236 ~ 10958783 (+)
AMCG00004950 NA coding downstream 158483 10999937 ~ 11009196 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 991230 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1281511 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1338008 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 1372373 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 1390453 9447589 ~ 9448533 (+)
G144512 NA non-coding downstream 154928 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 294303 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 356859 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 403148 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 487823 11329277 ~ 11331419 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 823562 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1088209 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3104927 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3146625 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3214916 7608901 ~ 7624070 (+)
G144677 NA other downstream 821227 11662681 ~ 11663368 (+)
G144940 NA other downstream 1939126 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 3313701 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4538145 15379599 ~ 15384811 (+)
G145932 NA other downstream 6923803 17765257 ~ 17771525 (+)

Expression


Co-expression Network