AMCG00004940


Basic Information

Item Value
gene id AMCG00004940
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10877927 ~ 10880307 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004940
ATGCTCTGGTTCCTGGGATCTCTGGTGGCCCTCGCGGAGGGGGGTGTTCCCGGGGAGGGCCTGGGATCTGAGCCCAACCCTGCTGTCGAGGGAGGGCCCGGGAGCGTGGGCTGGACCCCCCCAGACAGCCTGGAGCTGGACGAGACGAGTGAAGACATTGATGTCCCCTCCTCCTGGGCCGGCCTCTTCGTCAACCCCCCGCTCCTAGAAGACGCGGAGGACCACCAGGGCCGATGGGAACGCTCTCCCTTAGACTCTGTCCAGGCCAAGGGCAAGGAGAGAAAGAGGCCCAAGGATGTCAAACGGGACTGCAGACTGAGGACTAAGACCCTGCGTGTGCGAGACCTGGGGCTGGGCTACGAGTCCGACGAGATTGTCCGTTTCAAGTACTGTGCTGGCTCCTGCCAGAGCAAACGCACTGAGTACGACCTCACGCTCAACGCGCTCATGAAGAACGGCCTCATCAAAAGCAAGGAGAAGAAACTCGCCTGGCATCACTGTTTCAGAGGCTCAAGCATCGCCCAGCAGTGGGTGAGGCTGACGGAGATTGCACCATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004940 True 558 mRNA 0.62 3 10877927 10880307

Neighbor

gene id symbol gene type direction distance location
AMCG00004938 LOC106598945 coding upstream 36473 10838986 ~ 10841454 (+)
AMCG00004939 st3gal3b coding upstream 55055 10818400 ~ 10822872 (+)
AMCG00004941 NA coding upstream 79126 10776248 ~ 10798801 (+)
AMCG00004946 kdm4a,LOC108280529 coding upstream 137674 10727154 ~ 10740253 (+)
AMCG00004944 NA coding upstream 161727 10676345 ~ 10716200 (+)
AMCG00004951 pif1,LOC104945614,LOC107700539 coding downstream 51586 10931893 ~ 10940644 (+)
AMCG00004952 rad54l coding downstream 62942 10943249 ~ 10950084 (+)
AMCG00004953 LOC107672656,LOC107393234 coding downstream 75929 10956236 ~ 10958783 (+)
AMCG00004950 NA coding downstream 119630 10999937 ~ 11009196 (+)
AMCG00004957 NA coding downstream 302950 11183257 ~ 11195427 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1030171 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1320452 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1376949 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 1411314 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 1429394 9447589 ~ 9448533 (+)
G144512 NA non-coding downstream 116075 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 255450 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 318006 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 364295 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 448970 11329277 ~ 11331419 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 862503 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1127150 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3143868 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3185566 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3253857 7608901 ~ 7624070 (+)
G144677 NA other downstream 782374 11662681 ~ 11663368 (+)
G144940 NA other downstream 1900273 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 3274848 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4499292 15379599 ~ 15384811 (+)
G145932 NA other downstream 6884950 17765257 ~ 17771525 (+)

Expression


Co-expression Network