AMCG00004943 (LOC107743377)


Basic Information

Item Value
gene id AMCG00004943
gene name LOC107743377
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10653590 ~ 10663952 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004943
CACCTGAAATTCCTGAAGGGCCTGACCCTTGAGCGCCAGTTTCAGTTGCCAGTGAACAGCCAGAGTGCCCTGAGCACCCTTGCCACATTCCTACCTGCTGTTCTGTTCTCTCTGGCAGTCCGGCGCGTCCCTCCCCGCTTTTCCATCCCCCCCACCAACCATGAGGTGATGCCAGGGGGCAGTGTGAACCTGACCTGCGTGGCAGTGGGCGCCCCCATGCCCTACGTCAAGTGGATGGCAGGAGTGGTGGAGCTGACCAAAGAGGACGAGATGCCGGTGGGCCGCAACGTGCTGGAGCTCACCAACATCCGAGAGTCCGCCAACTATACTTGCGTGGCCATCTCTTCACTGGGCATGATTGAGGCCACAGCACAGATCTCCGTCAAAGCCTTGCCAAAGCCCCCCGCGGCCCTGATAGTGACTGAAACCACAGCCACGAGCGTCACCCTCACATGGGACTCTGGCAATTCGGAGCCCATCACATACTATGTGATTCAATACAAAGCCAAATCCTCCGAGTTGGGCTTCCAGGAAGTGGACGGGGTGGCGACCACTCGCTACAGCATCGGCGGCTTGAGCCCGTATTCGGAGTACGAGTTCCGGGTGATGGCGGTCAACAACATTGGGCGAGGCCCTCCAAGTGACATTGTAGATGCCCGCACCGGGGAGCAGGCCCCGTCCTCACCCCCGCTGCACGTCCAGGCTCGTATGCTCAGCGCCAGTACCATGCTGGTCCAGTGGGAGCCCCCAGAGGAGCCCAACGGCCAGATCCGAGGCTACCGGGTTTACTACACCACCAACCTGCAGTCGCCCCTCAACACCTGGCAGAAGCACAACACAGACGACAGCCGCCTCACCACTATCTCCAACCTCGTCACCGACACCACCTACAGCATCCGCGTGCTGGGCTTCACGTCTGTGGGAGACGGGCCCCCCTCCGACGTGCTCCAGGTCAAGACGCAGCAAGGCGACAAGTACTCAAGACGGGTGTTTGCCGTGTACCCGTGTCTCATTGTTTTCCTCCTGTGTACAGTCCCGGCCCAGCCCTCCAGCTTCGAAGCAGAAGCAGAGCTCGACACCAGGATCCTGCTAACGTGGCTCTGGCCCGTGCAGGAGCCGATCACCAAGTACGAGCTGATTTACTGGGAGGGAGATTCTGGAAATAAGATCCATGTCACTTTCAACCCAGCCGGCTCCTACGCGGTGGAGGGCCTAAAGCCAGACACGCTCTACAAGTTCTCCCTGGCGGCCCGCTCAGAAATGGGGCTGGGGCTAAAGAGAGCTCTCCTCCCAGTCCAGAGCGTCCATTTCTCTCCCCGCTTCATCGTCCCCGTTGTATTTTCAGCCCCTTCCGCACCCCCCCAAGACGTGCACGCAGTCAGTCTGAGCTCCACCAGTATCAAGGTGAGTTGGGTGGCCCCCCCAGCCGGGAGCCGCCACGGAGCCATTGCCCAGTACACCGTCGCCTATCAGTCCGTGAGCGGGGAAGATGCCGAGAGACATGAGGTGTCCGGATTAGCGCCTGAGGCCTCCAGCTATGTCCTGGAGGGCCTGGAGAAGTGGACTGAGTATCAGGTGTGGGTGAGAGCCCACACAGACGTGGGCCCGGGACCAGAGAGCCCTCCAGTGCATGTGCGAACCAACGAGGATGTGCCGGGTGCTCCTCCCAGGAAGGTTGAAGCCGAAGCAGTCAACTCCACTGCCATCCGGGTGACTTGGAAGGCGCCCCTCTCGGTCAAGCAGCACGGCCAGATCCGCGGCTACCAGGTCATCTTCTCCCGGCTGGAGAATGGAGAGCCACGGGGGCAGCCCAACATCATGGACGTGTCCCTTCCTGAAGCCCAGGTACGACAAGCCTGTAACCACACCGTCTTTATCCTGAAGTCCAGGCACGGGGAG

Function

NR:

description
PREDICTED: receptor-type tyrosine-protein phosphatase F-like

GO:

id name namespace
GO:0097374 sensory neuron axon guidance biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0007155 cell adhesion biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008201 heparin binding molecular_function
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004943 True 1899 mRNA 0.61 7 10653590 10663952

Neighbor

gene id symbol gene type direction distance location
AMCG00004945 ptprf coding upstream 45693 10605647 ~ 10607897 (+)
AMCG00004934 NA coding upstream 537085 10050058 ~ 10116505 (+)
AMCG00004936 NA coding upstream 712351 9938421 ~ 9941239 (+)
AMCG00004932 NA coding upstream 765408 9848584 ~ 9888182 (+)
AMCG00004930 NA coding upstream 873866 9763519 ~ 9779724 (+)
AMCG00004944 NA coding downstream 12393 10676345 ~ 10716200 (+)
AMCG00004946 kdm4a,LOC108280529 coding downstream 63202 10727154 ~ 10740253 (+)
AMCG00004941 NA coding downstream 112296 10776248 ~ 10798801 (+)
AMCG00004939 st3gal3b coding downstream 154448 10818400 ~ 10822872 (+)
AMCG00004938 LOC106598945 coding downstream 175034 10838986 ~ 10841454 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 805834 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1096115 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1152612 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 1186977 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 1205057 9447589 ~ 9448533 (+)
G144512 NA non-coding downstream 332430 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 471805 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 534361 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 580650 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 665325 11329277 ~ 11331419 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 638166 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 902813 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 2919531 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 2961229 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3029520 7608901 ~ 7624070 (+)
G144677 NA other downstream 998729 11662681 ~ 11663368 (+)
G144940 NA other downstream 2116628 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 3491203 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4715647 15379599 ~ 15384811 (+)
G145932 NA other downstream 7101305 17765257 ~ 17771525 (+)

Expression


Co-expression Network