AMCG00004951 (pif1,LOC104945614,LOC107700539)


Basic Information

Item Value
gene id AMCG00004951
gene name pif1,LOC104945614,LOC107700539
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10931893 ~ 10940644 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004951
ATTTGAAacaacattgtgttttaaaacgCAGCTGGTCCTGCACTTCTAATTTAATTCGCTAATATCAGTACTGTATTGGGCAGGtcccattttccatttttgagATGCTGCCTGGAGTGGATAACGCAGAGCTGCAGTGCTGTGCCACAGTGGAGCGGATCAGCGCCACTGGCCAGACCACCAAGCGCCAGGTCATCCGGAAGGCGGTGGTGACGCTGGGGCGCAACGAGTTCCAGGAGATGGTCCTTCGTGTTGAGGACGGCAAAGTTCCTCAAAGCTTCATACTGCGGGAGATCCAGCTCTTCACTCGTTTCGCTCGGGATGGGAAGAGCACCATCAGACTAGTCCCTGACCACATTCAAGTCCTGATCTCCGACTGCCCCCCGGATAGACTGCGTGTTTTCCTGAAGACGTTGAGCATCAAGCACCAGGCCTGGCAACAAACCGGCAAGCCCCTGGGGAATCGGGCCAAGCTGCTGTCCGGGCTGCCCCACAGCTTCGAGACCATCAGTCCTCTGCAGCAGAAGGACGTACAGAAAGCTAATGCCCTGCGAGAGAAGGTCAACCTGCAGCCCCCCAGTAAAGGCCTGCAGGGAAGAGATGGCAATAAAGCTGGTGGCCTGCAGGTGAAAAGACAGAGACCAGACTCCACAGAAAGCAGCCCCGTAAAAGCTTTGCACCCTGCTAAGAAGCCTGTCCTGACTCTGCCAGTGGCGAGGAAGCTGTCCAAAGAGCAGACCATGGTTCTGAGCGCCGTCCTCAGTGGGAAAAATGTGTTCTTCACAGGCAGTGCTGGTACGGGTAAATCTTTTTTACTGAAGAGGATTGTGGGATCCTTGCCCCCTAAAAGCACCTATGCCACAGCGAGCACTGGCGTGGCTGCCTGCCATATCGGGGGAACCACTCTCCATGCCTTCGCAGgtaTTGGGTCGGGCTCAGCCCCTCTGGAGCAGTGTGTGGACCTGGCTCAGCGCCCGGGGGTATTGCAGCATTGGACCAGCTGTCGCCACCTCATCATCGATGAGATTTCCATGGTGGAGGGGGAGTACTTTGACAAGCTGGAGGCCATAGCCAGGTCCATCAAGAGGTCTACTGAACCCTTTGGAGGGATCCAACTCATTGTGTGTGGAGACTTCCTGCAGCTTCCTCCAGTCAGCAAGGGCAAAGCAAAGTTCTGCTTCCAGGCAAAGAGCTGGCGGAAGTGTATTCATGTGAATATGGAGCTGACGGATGTGAGGAGACAGACGGACAAGTCCTTCATCTCCCTGCTGCAGGCGGTGAGGGTGGGCAGGGTCACAGAAGATGTCACAGCCCGGCTCATGGAAACTGCGTATCACACAATTGAGAGAGATGGTATCCTGGCAACCAGGCTGTGCACACACAAAGATGATGTGGAGCTGACCAATGAGAGGAAACTTGAGCAGTTACTGGGGGCAGTTCGGGTGTTTGAGGCCGTGGACAGTGACCCCCAGCTGGTGAAGCACATTGATGCCCAGAGCCCTGTGGGTCGGGTACTGCAGCTGAAAGTGGGAGCTCAGGTGATGTTGACGAAGAACCTGGATGTCCAACGCGGCCTCGTGAACGGAGCGCGGGGTGTGGTCGTGGGATTCGAGCCTGGAAACAAAGgCCTGCCACGGGTGCGTTTCCTGTGTGGGCTGACGGAGGCCATGAAGCCGGAGCGCTGGATGTTCAAGGCGGGGGGTGGCCTGTATCTCAGCCGCCAGCAGCTCCCTCTGAAACTGGCTTGGGCCATCTCCATCCACAAGAGCCAGGGGATGACTCTGGACTGTGTGGAGATCTCTCTGTCGCGGGTGTTCGAGAGCGGGCAGGCATACGTGGCCCTGTCGCGTGCCCGCAGTCTGGAGGGGCTCCGGGTCATGGACTTCGACCCCCGGGTGGTGAGGGCCGACCCAGAAGTGCTGCAGTTTTATCGCCGGCTGAGGAAAGAGCGCCTCCTCATGCAGGCCTCAATGGATGAGTACATAGAGAGAGCGAACCAGGAAAATGAATATCGATGACCGAATCTGCTCCAAGAGCAAGGAGCAGTATCTCTGCACTGTATGCATTTACATGTACAGAAactgatcctttttttttttaatccagtcATGTTTACATCTGAAATGCACTTTTCCATCAAATGTTATACCAAAGTATGCATTTGAATCACTACATCATGgtaatgaatgtatttacatCGGTAATGAGACTGAAGAGATCATATTCAGTGCAATCCATCTCATTCCCCATTGATGTTTTGAATACGAagactatttaaatgttttaatgtatgtatgatttTACATTAGGTTTTTCCACATTAGAAATGTGTAAAGGCAGTATATaggtgtatatatttgtacttttttaaaaaggcatcTTCTGACTGAactgttttttactttttttttgtaaataaagacCGTTTTCAAAAAC

Function

symbol description
pif1 Predicted to enable several functions, including 5'-3' DNA helicase activity; ATP binding activity; and DNA binding activity. Predicted to be involved in DNA duplex unwinding and DNA replication. Predicted to act upstream of or within DNA recombination; DNA repair; and telomere maintenance. Predicted to be located in mitochondrion and nucleus. Predicted to be active in replication fork. Is expressed in ectoderm; head; optic tectum; pectoral fin musculature; and proliferative region. Orthologous to human PIF1 (PIF1 5'-to-3' DNA helicase).

NR:

description
PREDICTED: ATP-dependent DNA helicase PIF1

GO:

id name namespace
GO:0000002 mitochondrial genome maintenance biological_process
GO:0006310 DNA recombination biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0000723 telomere maintenance biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K15255 PIF1; ATP-dependent DNA helicase PIF1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004951 True 2436 mRNA 0.52 13 10931893 10940644

Neighbor

gene id symbol gene type direction distance location
AMCG00004940 NA coding upstream 51586 10877927 ~ 10880307 (+)
AMCG00004938 LOC106598945 coding upstream 90439 10838986 ~ 10841454 (+)
AMCG00004939 st3gal3b coding upstream 109021 10818400 ~ 10822872 (+)
AMCG00004941 NA coding upstream 133092 10776248 ~ 10798801 (+)
AMCG00004946 kdm4a,LOC108280529 coding upstream 191640 10727154 ~ 10740253 (+)
AMCG00004952 rad54l coding downstream 2605 10943249 ~ 10950084 (+)
AMCG00004953 LOC107672656,LOC107393234 coding downstream 15592 10956236 ~ 10958783 (+)
AMCG00004950 NA coding downstream 59293 10999937 ~ 11009196 (+)
AMCG00004957 NA coding downstream 242613 11183257 ~ 11195427 (+)
AMCG00004958 NA coding downstream 261317 11201961 ~ 11214509 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1084137 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1374418 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1430915 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 1465280 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 1483360 9447589 ~ 9448533 (+)
G144512 NA non-coding downstream 55738 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 195113 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 257669 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 303958 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 388633 11329277 ~ 11331419 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 916469 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1181116 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3197834 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3239532 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3307823 7608901 ~ 7624070 (+)
G144677 NA other downstream 722037 11662681 ~ 11663368 (+)
G144940 NA other downstream 1839936 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 3214511 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4438955 15379599 ~ 15384811 (+)
G145932 NA other downstream 6824613 17765257 ~ 17771525 (+)

Expression


Co-expression Network