AMCG00004952 (rad54l)


Basic Information

Item Value
gene id AMCG00004952
gene name rad54l
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10943249 ~ 10950084 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004952
AGAAGAAGCCTGGCTCCCAGTCAGCTGGCCAAGAGGAAGCATGGAGACTCCTCTGAGGATGAGGACTGGGACCCGGAGGCAACCCAGAAGCGAAAGAAAGGTGGATGTGGAAATGAAGACAGACAAAACTATGTTTCCCCATTTCGAAAACCCCTAACCCAGCTCACCAACAGGCCGGTCTGTCTGGACAGCAGCAAACATGAAGCCTTTATTCGCAGTATTCTCTCAAAGCCATTTAAAGTGCCCATTCCTAATTACACCGGCTCCCTTGGTATAAGAGCGCTGGGTTTGAAGCGGGCCGGAGTCAGGAAAGCACTTCATGATCCTTTTGAAGAAGGAGCTTTGGTACTGTATGAACCCCCCCCACTGAGTAATCATGACCTGATCAAGGCAGAAAAAGAGAAACTCCCTGTCCATGTTGTTGTTGACCCCATACTGAGTAAAGTGCTGAGGCCTCATCAGAGAGAGGGCGTGAAGTTCCTATGGGACTGTGTCACTGGCAGACGCATCCCTGAGAGCTATGGCTGCATCATGGCAGACGAGATGGGTCTGGGGAAGACCCTGCAGTGCATCACTCTGATGTGGACTCTGCTGAGACAGAGTCCTGACGCCAAACCAGAGATCGACAAGGCCATTGTGGTGTCCCCCTCCAGCCTGGTCAGGAACTGGTATAATGAGGTGGGGAAGTGGCTGGGAGGGAGAATCAACCCACTTGCCATTGATGGGGGCTCCAAAGAGGAGATCGACAGGAAACTTGTGAATTTCATCTCACAGCATGGTCTGAGGGTGCCCTCGCCCATCCTTATCATTTCCTACGAGACCTTCCGTCTGCATGCCGCTGTCCTGCACCGGGGGAAAGTGGGTCTGGTCATCTGTGATGAGGGTCACCGACTAAAGAACTCTGAGAACCAGACGTACCTGGCTCTGAACGCCATGAGTGCCCAGCGCCGTGTCCTCATCTCTGGGACTCCCATCCAGAACGACCTGCTGGAGTACTTCAGTCTGGTGCACTTTGTCAACGCTGGCATCCTTGGGACCGCTCAGGAGTTCAAGAAGCGTTTTGAAACCGCCATCTTGAAAGGCCGTGATGCTGATGCCAGCGACAAAGATCGCCAGTGTGGAGAGGAGAAACTGAAAGAGCTCATCTCAATCGTCAATGGGTGTTTAATCAGAAGGACATCAGACATTCTTTCAAAGTACCTCCCTGTGAAGATCGAACAGGTCGTCTGCTGCAGGCTGACCCCTCTGCAGACCGAGCTGTACAAACTCTTCCTCAATCAGGCGATGCCAGCGGAGGAGCTGAATGGGGGCAAGATGAGCGTGTCCTCGCTGTCCTCCATCACCTCTCTGAAGAAGCTCTGCAACCACCCAGCCCTCATCTACGACAAGTGCGTTGAAGGAGTGGAGGGCTTTGATGGTGCCTTGGATCTCTTTCCACCTGGGTACTCTACAAAAGCTGTGGAGCCGCAGCTCTCGGGAAAGATGTTGGTTCTAGACTATATTCTCGCGATGACTCGAAGCACCAGCAGTGATAAGGTAGTGCTGGTCTCAAACTACACCCAGACTCTGGACCTCTTTGAGAAACTGTGCCGATCTCGAAGATACCTGTACGTTCGACTGGATGGCACAATGTCCATTAAAAAGAGAGCGAAAATTGTGGAGAAATTCAATAGCCCTTCGAACCCAGAGTTCATCTTCATGCTGAGCAGTAAGGCCGGAGGTTGCGGATTGAATCTGATTGGCGCAAACCGGCTGGTGATGTTCGACCCGGACTGGAATCCGGCCAATGACGAGCAGGCGATGGCCCGCGTTTGGAGAGACGGGCAGAAGAAGACCTGCTACATTTACAGGCTCCTGTCGACCGGCACAATTGAGGAGAAGATCCTGCAGCGCCAAGCCCACAAGAAGGCGCTCAGCAGCTGTGTGGTGGACGAGGAGCAGGATGTGGAGCGCCACTTCTCCCTGGAGGAGCTGAGGGAGCTCTTCTCCCTGACGGAGGACACCACCAGTGACACCCATGACAGGTTCCGCTGCCGGCGCTGTGTGAATGGCCGTCAGGTCCGCCCGCCCCCCGAGGAAGCGGACTGCACCAGCGACCTGTCCCAGTGGCACCACTGCTCCGACAAGAGGGGCCTGAGGGACGCCGTGTTGCAGGCCTCCTGGGATGCTGCCGTCTCCTTCGTCTTCCACCAGCGCTCCCACGAGGACCAGCGGGGGCTGCTGTGAGCCGGCGCCTGTGGGACGGCTCAGTCACTACGCAGCACTGTATTTCCAAAATGAAGAGCTGCAACTCACGGTTTTAtctttttcagtctttttggaagagaatgagagaaacTCAAGACATTAACCCTTTATCTCCAAgtatgaataataagaatatttaatttagacttCATGTCTTAGGGAGAAAGGAAGTACCCCCTCCCCATGTCTCTTATTAAAATGTCCTCgacattatgtaaatatttatttgtaagacTGTTTGCCctgttataatacaaatgtctgTAAACTGCTTCTATTTTTATctatcaatttaaaaattatgCTGTGCTCGAGCCCTTCAAATCACCTGGAAAAGTGATGTTTTTGCAAAGGAAtctttatttcacaaatgtataaaaacatatattaa

Function

symbol description
rad54l Enables ATPase, acting on DNA. Predicted to be involved in double-strand break repair via synthesis-dependent strand annealing and reciprocal meiotic recombination. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in breast cancer; disease of cellular proliferation; non-Hodgkin lymphoma; and pancreatic cancer. Orthologous to human RAD54L (RAD54 like).

NR:

description
PREDICTED: DNA repair and recombination protein RAD54-like

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10875 RAD54L, RAD54; DNA repair and recombination protein RAD54 and RAD54-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004952 True 2638 mRNA 0.52 17 10943249 10950084

Neighbor

gene id symbol gene type direction distance location
AMCG00004951 pif1,LOC104945614,LOC107700539 coding upstream 2605 10931893 ~ 10940644 (+)
AMCG00004940 NA coding upstream 62942 10877927 ~ 10880307 (+)
AMCG00004938 LOC106598945 coding upstream 101795 10838986 ~ 10841454 (+)
AMCG00004939 st3gal3b coding upstream 120377 10818400 ~ 10822872 (+)
AMCG00004941 NA coding upstream 144448 10776248 ~ 10798801 (+)
AMCG00004953 LOC107672656,LOC107393234 coding downstream 6152 10956236 ~ 10958783 (+)
AMCG00004950 NA coding downstream 49853 10999937 ~ 11009196 (+)
AMCG00004957 NA coding downstream 233173 11183257 ~ 11195427 (+)
AMCG00004958 NA coding downstream 251877 11201961 ~ 11214509 (+)
AMCG00004959 zfyve9 coding downstream 267108 11217192 ~ 11221581 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1095493 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1385774 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1442271 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 1476636 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 1494716 9447589 ~ 9448533 (+)
G144512 NA non-coding downstream 46298 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 185673 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 248229 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 294518 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 379193 11329277 ~ 11331419 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 927825 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1192472 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3209190 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3250888 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3319179 7608901 ~ 7624070 (+)
G144677 NA other downstream 712597 11662681 ~ 11663368 (+)
G144940 NA other downstream 1830496 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 3205071 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4429515 15379599 ~ 15384811 (+)
G145932 NA other downstream 6815173 17765257 ~ 17771525 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031778 rad54l coding NC_007117.7 CM002890.2 3473657 ~ 3491357 (+)
grasscarp (Ctenopharyngodon idella) CI01000024_07549529_07561249 RAD54L coding CI01000024 null 7549515 ~ 7561249 (-)