AMCG00004953 (LOC107672656,LOC107393234)


Basic Information

Item Value
gene id AMCG00004953
gene name LOC107672656,LOC107393234
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10956236 ~ 10958783 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004953
ACCTGAAGGTCCTACAGAAGCGGAGACTGTAAGTGAGGGACGTTCTTGCAAGCGGCTTATTGCATTAAACCACTAAACCAAGGCTAACAATGGTATTGAGGGAGGAGAAAATGCTCACAAACGGAGAGCCCGATGAGgaggaggaggaagaggaggaggaagatatGGTGGACCCCCTGACGACCATCCGGGAGCAGTGTGAGCAGACCGAGCACTGTGTCCACACGCGTGAGCGGCTGGAGGCCTGCGAGACCAGGGTGGGCTCCCGCTCACATACAGAGGAGGAGTGCACAGAGGAGCTCTTTGACTTCCTTCATGCCAGGGACCACTGTGTGGCACACAAGGTCTTCAATTTGTTGAAATGAAGTGTGGCAAGGGTGATCTATTCTAGCGGTGGTCGTTCCCACAGCTgtgaaatctgtatttaaaaaagaaaaacatctgtcaGAAGAAATCTTgatgtggattttattttatcctctttttgttttttggtacaGTTTCAGGAATGTTTTGAAACCACAGCTTACCGTCTTTGTACCTGtatgtgaataaaatgtaagtTCTTATTGAAACAGTGGTACCATTCATAACGTGCGAGTTTGTATTCATTACCTGTCTGTTTCCTTGCTTCTGTGTTGGTTGTGCACTTGCAGATTTGAATGATGTACAATGGAGTTCCTAACTAGACACCCCTTATGAAGAACAGAGCTTAGGTTCACACAACACATCTGACTCCCACTCAATTTGATTTCTCTACATTCCCTAAACCTAATTATTTATAGGTTTGTTTGCCTAGCCAAGGCTTAGTAtaaaaattaaggaaaatacGGCCCAAGTGTCGTATGGATCACGTGGCTTGTAAAGCTTTACAAACTGCTCAAAGGAACGGAGCAAAGCAAAACTTTCATTggacaagaacaaaaataatacaaacgaAAACATTATTGCAAGTTTCGGCtacaatatttcatatatttactaTGGTGAGCAGGACAGACACTAGTCTTGAGTCAGTGCATTTCTGTGCATGGTTTTTTCAGATGAGCATGTTTTCTCAGAGCCTCAATCTTGTACGAtgcttacattttcattcagaagCAAACTGgatgttttcatttatcaaaCTGAGTTCAGCACTCCTTGAGAACAAGCTTTTATGTTTgatttacaatgcatttataCTGCATGTATACAggtgaaatatattattgaattgGTATTctgaattcattattttttcatctaaAAGAAATGGCAAAATTCAACAAATCACGTGCTCCCGgttaacatatacatttattgtattgaataacGGACATGATTAAATAAGCAATCTAGCAATGTGCATGGCTCTGAT

Function

NR:

description
PREDICTED: cytochrome b-c1 complex subunit 6, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c biological_process
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0070469 respirasome cellular_component
GO:0008121 ubiquinol-cytochrome-c reductase activity molecular_function

KEGG:

id description
K00416 QCR6, UQCRH; ubiquinol-cytochrome c reductase subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004953 True 1360 mRNA 0.41 4 10956236 10958783

Neighbor

gene id symbol gene type direction distance location
AMCG00004952 rad54l coding upstream 6152 10943249 ~ 10950084 (+)
AMCG00004951 pif1,LOC104945614,LOC107700539 coding upstream 15592 10931893 ~ 10940644 (+)
AMCG00004940 NA coding upstream 75929 10877927 ~ 10880307 (+)
AMCG00004938 LOC106598945 coding upstream 114782 10838986 ~ 10841454 (+)
AMCG00004939 st3gal3b coding upstream 133364 10818400 ~ 10822872 (+)
AMCG00004950 NA coding downstream 41154 10999937 ~ 11009196 (+)
AMCG00004957 NA coding downstream 224474 11183257 ~ 11195427 (+)
AMCG00004958 NA coding downstream 243178 11201961 ~ 11214509 (+)
AMCG00004959 zfyve9 coding downstream 258409 11217192 ~ 11221581 (+)
AMCG00004967 txndc12 coding downstream 289357 11248140 ~ 11252830 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1108480 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1398761 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1455258 9494496 ~ 9500978 (+)
G144218 NA non-coding upstream 1489623 9464141 ~ 9466613 (+)
G144210 NA non-coding upstream 1507703 9447589 ~ 9448533 (+)
G144512 NA non-coding downstream 37599 10996382 ~ 10997606 (+)
G144534 NA non-coding downstream 176974 11135757 ~ 11139343 (+)
G144549 NA non-coding downstream 239530 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 285819 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 370494 11329277 ~ 11331419 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 940812 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1205459 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3222177 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3263875 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3332166 7608901 ~ 7624070 (+)
G144677 NA other downstream 703898 11662681 ~ 11663368 (+)
G144940 NA other downstream 1821797 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 3196372 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4420816 15379599 ~ 15384811 (+)
G145932 NA other downstream 6806474 17765257 ~ 17771525 (+)

Expression


Co-expression Network