AMCG00004954


Basic Information

Item Value
gene id AMCG00004954
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10950275 ~ 10955865 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004954
ATGGAGCACGTAAAAGAAGAATTGAATCCGCGAGTAGCAACTTTATTGCAAATATGTACCAAAGTAGTTAGCGAACATATGCATGTACTGGAAAAGCAGGTCTGGGATTTGCCAGTTTCTCTGTTGGAAGAGCTCCTACCACACTTGAATATATTCTACCTGGAGAGGATAGAGGACTCTGCTGTTCGGAAAGGCTTGTCCACTGATTCTGCCTGGTTTGGACTATGGATGGAAGTGGTGAAAAACAGGCCTCCTGGACGCAAGGTTAGTGAGTGGAAGTCATCACTGCAATGCGCATTCTTTATAAACTGGAGGCAGAAGTTCCTTGAGCGCCTCTTCCACATGACTATGTTTGGTAACTACAGAAAAGCAGGGCACCCACGACTACAAGACTCCCGTTTTTCAGTCCTGACACTGACAGCCAAGTACGTGAAGGTCCTGATTCTGTCACGGTCCCTGATAGAGACCACTAAGATGACCTCAGCTGCGTTCAGGCCTGTCATGAGGATTTTAGAGGGCACCGTCACCCACATGAAGGTTTATGACATAAGCCTTCCATTCCTCGATCACAGCCTAAGGTCCGTGTTGTTAATCTTCCACCGCCTTCTTCATCATGGCTCTGTCAGGACTCTAATCATGAGTAAATGCGGTGAGTCCAGCCCCATACTGTGGACTTGGATGCTTCAAATGAGTGCTGGATATGAATGCTCCTTGTCCAGTCCAAGAATTCAACGGCCTTCTGATCAGACCCTGGAAAAGAAGAGAATTTCCACTTTGGCTACTGGAAATCCGCCTCCTTCCACATCTAATGTCAGGACTTCCCAAGTGTCAGACGTGGAAGGCTGCAGTCTGAAGGACAAGAGGACAGTCAGCAATGGAAAAAGGACATTGCAAGATGAACCAAGTGCACAATGCTTTAAACTGCCTCGGCTTGAACGGGCTGAATCAGAGGATGGGGCTCAGGTACAagaatgcattttatgttttgaaaaccCCTCATCAGTGCAGATGCATGTTTCTAAAGGACCATTCGAAGGCGCCCAGAGTGCTCCATCCTTTCTCTGCGCGGGGGCAGATGGGGAAGACACCCCTATGGGAAAAATCAGTGCCCTGGTGCTGGAAGCGAGTAACTATGTCCTGGCTCACAATCTTGCACCCCTTCTCCCTTCTTGGATCTGTCTTCACTCCCTGCAAGTGTCCAGTGAATGGATCATAGAGGAGCCATGTCTTTTGAAGGTGGTGGAGGCCTTGAGCTTGCTGTCCCAGAATCCTGACTGCTCCCTCTCAGAGCTGTCCATCAGCAGCTTGTCCTGCAGGATGCCCATAGCGGCCTTGCTGGCCAGGTTGCTGTCTGCCTGCCCACGCCTGGAGGAACTCACCCTTGGTTTCATTCAAGTAAACCAGCCAAAGAGCAATCCTTCTCATCTGCCTGCCCCCATAGAAAGCTCTTTAAAGACACTGCGAGTGGAGTTCCCTGCAGAATCGGTGTGTCTCCAGTCCTTGGTGACAGTGTTGCGTGGCACGCAGAGTCTGACCAGTCTTTACCTGAAAGGAATCCGGTGTAAAACTGGCCATCTCGGCCCACTGCTATTCTCCCTGCCAGAGTGCAGTCTAAACCTGCAGCACCTTTCCCTGGACGACATTAACCTCTCAGGCTGTCACAGGGAGGTGCTTCACCTGCTGAAGAGTTGTCTTACTTTGAAAGGGTTATGCCTTACTGACTGCCGACTGTTTGAGAAGAATAAACAAGAGTTCCTGGCCCAGTTAATCAGCTCAGTAAAGTGTCATCCATCTCTTACATCTCTGACTTTGTCAAGAAATCGCCTTGGGAACGACGGACTGATAGTGTTGGCAGATCTATTCTCTGGAGAGTCTCCCAGCAGGATTCGACATTTGAATGTCAGCGCAAACTACATCCTGCCAAACGGGCTGCTGGAATTTGGGGCGTTGCTGGAAAGCCACCGGCCCCCTCGGGAGTTAAAGCTGGACGTGCGAGAGAACCCTCTGGACCGAGACCCCCAGACAACAGCGCGTGCCATGAAGCAGCTGGGCTCTCTGTGCCACCTGATCAAAGACTGCTGGAACTCCAGGACCACCTTCGCGGACCACATCAGTGTCATGTGA

Function

GO: NA

KEGG:

id description
K10347 LRRC41, MUF1; leucine-rich repeat-containing protein 41

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004954 True 2124 mRNA 0.50 10 10950275 10955865

Neighbor

gene id symbol gene type direction distance location
AMCG00004942 NA coding downstream 53469 10894938 ~ 10896806 (-)
AMCG00004937 NA coding downstream 826448 10114998 ~ 10123827 (-)
AMCG00004933 med8 coding downstream 900286 10045216 ~ 10049989 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding downstream 1102565 9842918 ~ 9847710 (-)
AMCG00004922 gadd45a,LOC106568974,LOC107678351,LOC107555372 coding downstream 1190251 9757227 ~ 9760024 (-)
AMCG00004956 NA coding upstream 36820 10992685 ~ 10994644 (-)
AMCG00004955 dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107684938 coding upstream 67753 11023618 ~ 11026477 (-)
AMCG00004947 NA coding upstream 148699 11104564 ~ 11105115 (-)
AMCG00004948 mknk1,LOC107602795 coding upstream 179870 11135735 ~ 11147198 (-)
AMCG00004949 mob3c,LOC106613547,LOC106574029,LOC108270829 coding upstream 195518 11151383 ~ 11163569 (-)
G144353 NA non-coding downstream 1011664 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 1199497 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 1249866 9699314 ~ 9700409 (-)
G144286 NA non-coding downstream 1266156 9683052 ~ 9684119 (-)
G144241 rpl5,LOC103464060,LOC106584167,LOC101169281,LOC107732018,LOC107566486,LOC107692344,LOC107590646,LOC103368809 non-coding downstream 1398969 9547203 ~ 9551306 (-)
G144502 NA non-coding upstream 220 10956085 ~ 10958001 (-)
G144587 NA non-coding upstream 297750 11253615 ~ 11254574 (-)
G144612 fubp1 non-coding upstream 363261 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 366718 11322583 ~ 11328481 (-)
G144657 NA non-coding upstream 543307 11499172 ~ 11501075 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2043681 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2102500 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 2573274 8353989 ~ 8377001 (-)
G143659 NA other downstream 5167091 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 6833861 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 1179513 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 1388806 12344671 ~ 12348328 (-)
G145046 NA other upstream 2380344 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 4008549 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4547217 15503082 ~ 15535145 (-)

Expression


Co-expression Network