AMCG00004956


Basic Information

Item Value
gene id AMCG00004956
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 10992685 ~ 10994644 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004956
GCTACCAATCAGCCCAGGATCCCTTCCACTAGGCTGGCTTTGCAGAGCTTTGATATGAACTATGGGGTTCAGTTAGGAGAGCGGTGGCCCTCGGTGCGAGTCAGCCTGCTGTCAGAGCAGAAGTACGGGGCTCTCATCAACAACTTCTCAGCACAACAGGAGCTGATGGCGGACCTGGAGAGGCAGGGGGCTCAGGATTTCGTCCAGGAGGCTTTTAGGACTTGGGGTGTCACCAAAGACACCCCTCAGAGTATCTTGCTAGGAACTGGAGGTGCTGTATCAGACTGTGACACAGGAGGAGATGAGGCAGACATGCCCCCCAGCATCAGCCCAAATGtgaagtgttttgtgtttcctaAAGGTGACATCACTCGCTTTCATTCTGCCAGGCCTGACAGCACTGGTCTCCTGGGATATTACCTACTGGATGCCGCCTCCCTGCTCCCCGTGCTCGCCCTGGACGTGCACGATGGGCACACCGTGCTGGACCTGTGTGCTGCGCCCGGGGGCAAGACTCTGGCCCTGCTCCAGACACAGGCCTGCAGACACCTGGCACTCAACGACTCCTCTGTGTCACGCACTGCCCGTCTGCGCAGGGTCCTGCAGAGCTACATCCCCAGAGAGCACCGCTCCGAGGACCAGGTCCGCATCACTTCGTTCGAGGGCAGGACTTGGGTAGAACTGGAGGGTGAGACTTTTGACAGAGTGCTGGTAGACGTTCCCTGTACAACAGACAGACACGCCCTGATGGAGgaggaaaataacatttttaaacggTCCAGGACCAAGGAGAGACAGAGGCTGCCCCTCCTACAGACACAGCTCCTG

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K21970 NSUN4; 5-methylcytosine rRNA methyltransferase NSUN4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004956 True 828 mRNA 0.57 4 10992685 10994644

Neighbor

gene id symbol gene type direction distance location
AMCG00004954 NA coding downstream 36820 10950275 ~ 10955865 (-)
AMCG00004942 NA coding downstream 95879 10894938 ~ 10896806 (-)
AMCG00004937 NA coding downstream 868858 10114998 ~ 10123827 (-)
AMCG00004933 med8 coding downstream 942696 10045216 ~ 10049989 (-)
AMCG00004931 glul,LOC106569199,LOC106584177,LOC102795441,LOC106560331,LOC102192933 coding downstream 1144975 9842918 ~ 9847710 (-)
AMCG00004955 dmbx1,dmbx1a,LOC107588924,LOC107743378,LOC107700538,LOC107684938 coding upstream 28974 11023618 ~ 11026477 (-)
AMCG00004947 NA coding upstream 109920 11104564 ~ 11105115 (-)
AMCG00004948 mknk1,LOC107602795 coding upstream 141091 11135735 ~ 11147198 (-)
AMCG00004949 mob3c,LOC106613547,LOC106574029,LOC108270829 coding upstream 156739 11151383 ~ 11163569 (-)
AMCG00004962 NA coding upstream 201831 11196475 ~ 11201000 (-)
G144502 NA non-coding downstream 34684 10956085 ~ 10958001 (-)
G144353 NA non-coding downstream 1054074 9937980 ~ 9938611 (-)
G144295 NA non-coding downstream 1241907 9744869 ~ 9750778 (-)
G144292 NA non-coding downstream 1292276 9699314 ~ 9700409 (-)
G144286 NA non-coding downstream 1308566 9683052 ~ 9684119 (-)
G144587 NA non-coding upstream 258971 11253615 ~ 11254574 (-)
G144612 fubp1 non-coding upstream 324482 11319126 ~ 11322006 (-)
G144614 NA non-coding upstream 327939 11322583 ~ 11328481 (-)
G144657 NA non-coding upstream 504528 11499172 ~ 11501075 (-)
G144659 NA non-coding upstream 511034 11505678 ~ 11506002 (-)
G144115 LOC108413222,LOC107749977,LOC107730703,LOC107698886,LOC107675437,LOC107564626 other downstream 2086091 8872885 ~ 8906594 (-)
AMCG00004894 kat3,kyat3,ccbl2,LOC100332215 other downstream 2144910 8836360 ~ 8847775 (-)
G144050 selenof,LOC106598901 other downstream 2615684 8353989 ~ 8377001 (-)
G143659 NA other downstream 5209501 5736809 ~ 5783184 (-)
AMCG00004819 zbtb37,LOC106613586 other downstream 6876271 4109082 ~ 4116414 (-)
AMCG00005011 best4,LOC103396708 other upstream 1140734 12135378 ~ 12156378 (-)
AMCG00005022 NA other upstream 1350027 12344671 ~ 12348328 (-)
G145046 NA other upstream 2341565 13336209 ~ 13336746 (-)
AMCG00005077 arpc5,arpc5b,LOC103032016,LOC108431159,LOC107698380,LOC104921830 other upstream 3969770 14964414 ~ 14969242 (-)
AMCG00005111 NA other upstream 4508438 15503082 ~ 15535145 (-)

Expression


Co-expression Network