AMCG00004957


Basic Information

Item Value
gene id AMCG00004957
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11183257 ~ 11195427 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004957
ctctctctctctctctctctctctctgtgaactGGTTATTCATCCAGCTTGTGTGACTCAGGGAGGGTGGAGACTCGGAGGGCTGCAGTACCAGTCACACTttgtcagtttctctctctccctttttttttttttttccctctttcactctctccctttttccctttttcctttCTCCCTGTCCTTCTCAATATCCCTCCAGTGAGCAGGGACTTGGGGGTCAGTTCTTCTGACACAACCTGCTTCTCCCAACTCCCTGGATCAGAAGTCATACAGAAGAACAGGTTTTTGGCCTTTCCCTTAGGAAGGACAGGAAACGGAAGTCAAGATGCTTATAGAACTGGGAACGAGAGCGTTTGAACTCTACAATGACTTCTTGACGAAAACGGACTCCAGGGTGAAGCCCTACCCCCTGATGCAAACTCCAGTCCACATGACGTTAATTCTGTTGACCTATGTGTTCTTTGTGCTGTATCTGGGGCCACGCATCATGGCCAACCGGAAACCCTTTCAACTCAAGTGGGCCATGATTGTGTACAACTTCTCCATGGTTGCGTTGTGCTCCTTTATAGTTTATGAGTTCATGATGTCTGGATGGGCGACCACCTACACTTGGAGATGTGACGCTTGCGATTATTCAAACAGCCCACAAGCTCTCAGGgtttTCTTCGTCTTGAGGAAGAAGCACAGCCAGATCACCTTCTTGCACATTTTCCATCACTCTGTCATGCCATGGActtggtggtggggggttaCAATTGCACCTGGGGGAATGGGTTCGTTCCACGCCTTGGTCAACTCCGTAGTGCACGTCATCATGTATTTTTACTATGGACTGGCTGCTGCTGGACCCAGATTCCGGAAATACCTCTGGTGGAAGAAGTACATGACCGCAATCCAACTTgttcaGTTTGTTCTTATCTCGATCCACGCTAGCCAGTACTACTTCATGGACAAGTGTGATTACCAGATACCTCTCTTCATCCACTTGATCTGGATGTATGGCACCTTCTTCTTCGTCCTTTTCTCCCATTTCTGGTACCAGGCCTACGTGAAGGGCAACCGACTGCCCAAGGTCATGGAGAAGCAGAACGGCACGGAGCCTGTTGTGGCCAATGGCAAACATATGGAGAATGGGGTGGCCCATCAGGAGAAGAATGGCAGCGTCCTCCAAGGCAAAATGAAGGAAGTCTAATGgacagcaaaaaaagaaagaaacaaacaaacaaacatcataaAACCACCATGGATtccaaagtatatatatttaaatatatatatataaatataatttttttttcagattaccTTTTTTATGCACAAAACATGGGAGATGAAATGGCCGATGGACTGTTCCTTTCCTCTTGTCATGAGAAAGCTGACTGCGGAGCATTATGAATGAAGAGAAGACCACCACCCAAGTCACCTTCACTGACGTTGCCTGCAAGCCCAGGGTCAAAACTGCCTGTGTTAGCCACCGAGGGccccctctccccttcccccccGCTTTAATAGGGCAGGCATGACTCCCCCCCACTTAGCTTGAGAGAAAGCCAAGTTCTTTAACAGTGATGTACAGTTCTTATGGAGAAACTTGAATACTATTGTAAATAAAGAACAAGAATCAAACCCATTGGGTCAGTGTGGTTGAGACTTCCTAGTTTTACCATGTAAATTATTACTGAagcaaaatacatcaaaaatcATAATTCAGATGCAAAGAAcatgaataagaaaaacattgtgGTGTGTGGACATTTATTTAAGCATTAATGTTCTGCCATTTTGATTCAGAGGCTCTTATGAAGGAAATCCTATGATATTTCAGCCTGGATTTGTGATGTTCTTGTTTCTTGCATATCGATAtgaagttttaattttgtgtaaaCCTACTGAGAACTGAAGAGAACTTGTACTGAACTGTTTTTTTGCAAagtttatgaataataataatatttatgaatccAATCAATCTTGATTTCAGGATGGCAGAAAAAAGCAGGTCGGGGTTGAGGCCTATATGACCCCTAATACAGGCAGTTTCGATCCCTCGCTTTCTTTGGCATTTGAGTGCTGGATGTAGCTTTATTTATCCATGCCTAATATCAACACAACTAGTGAGCAGAAATGCCAAATTAATTTGAGGgaaatgtttgttatttgtatttttattttttattgagaaAAGAAACCTATTAATGAGTTTGTATGATTCCAGCTACAATGTTTTTGCACTCCCTTCTTTATACTGGTGCAGTGGTGGTAAAGCTGCAGTTTCATGAAAATGTCCACTTGCAGCTTTAGTATTCAGGTCCTTAGTCTTTCAAGCTCAGAAACAAAGTACTGCACTGACCAACATATCATTTTGTGTACAGTATCACTTccatggggggaaaaacacattcaaagaacagaaaaatgCTGTTTTCCAATGTCATTAATAGGATCTCATACTTCACTCCCATATTTCCAGAAGCACTGAATTAATGAGTAAGGTGTTCCATCAATGTCCTGTATTAGCTAATTAATTCATTTGCTGGTTTTAATTAAGGAGTTACACATCTTATGGAGAAAAATGGCAAAAGCAAGGAGCCATAAAGACATGAAGTCATTCAAGCATGTTTGTGAAGTCAAGTAATGATTCCAAGAGGTAGGACTAAGGCAAGAGAAGTCTCCACCTGAGCCTCTTCCAGTCACATTGATCACATTTACCCTGGGGGACCAGTGTCTTTAATCAATACCACCTCCCTCACTGGGTAGGTAAAGCTTAAAGGGCCCATTAGGTGCTCCAGTTCCTTCTGTgcaaatggtttaaataaagGCTGGGGAAAACCAACATGACCATTGTTAAAAGCTTGCAATgggttgtatttttattaagtgAGCACTTTTCTTTTGGTTTGCCAGAGCAGGGATtcagaaattatataaaaaaaaactcccacctcttcattttacagaaaatcTTGAACTATTAAACTT

Function

GO: NA

KEGG:

id description
K10247 ELOVL1; elongation of very long chain fatty acids protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004957 True 2982 mRNA 0.42 7 11183257 11195427

Neighbor

gene id symbol gene type direction distance location
AMCG00004950 NA coding upstream 174061 10999937 ~ 11009196 (+)
AMCG00004953 LOC107672656,LOC107393234 coding upstream 224474 10956236 ~ 10958783 (+)
AMCG00004952 rad54l coding upstream 233173 10943249 ~ 10950084 (+)
AMCG00004951 pif1,LOC104945614,LOC107700539 coding upstream 242613 10931893 ~ 10940644 (+)
AMCG00004940 NA coding upstream 302950 10877927 ~ 10880307 (+)
AMCG00004958 NA coding downstream 6534 11201961 ~ 11214509 (+)
AMCG00004959 zfyve9 coding downstream 21765 11217192 ~ 11221581 (+)
AMCG00004967 txndc12 coding downstream 52713 11248140 ~ 11252830 (+)
AMCG00004970 NA coding downstream 114533 11309960 ~ 11314366 (+)
AMCG00004968 fubp1 coding downstream 121274 11316701 ~ 11325663 (+)
G144534 NA non-coding upstream 43914 11135757 ~ 11139343 (+)
G144512 NA non-coding upstream 185651 10996382 ~ 10997606 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1335501 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1625782 9554100 ~ 9557475 (+)
G144227 NA non-coding upstream 1682279 9494496 ~ 9500978 (+)
G144549 NA non-coding downstream 2886 11198313 ~ 11199835 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 49175 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 133850 11329277 ~ 11331419 (+)
G144658 NA non-coding downstream 310255 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 375509 11570936 ~ 11577247 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1167833 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1432480 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3449198 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3490896 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3559187 7608901 ~ 7624070 (+)
G144677 NA other downstream 467254 11662681 ~ 11663368 (+)
G144940 NA other downstream 1585153 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2959728 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4184172 15379599 ~ 15384811 (+)
G145932 NA other downstream 6569830 17765257 ~ 17771525 (+)

Expression


Co-expression Network