AMCG00004959 (zfyve9)


Basic Information

Item Value
gene id AMCG00004959
gene name zfyve9
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 11217192 ~ 11221581 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00004959
ATGCTATCGCTGCTGCGCTCAGATGCTCAGCGCAAACAGACCCAAAGCTGTAGAGGAGATGTTCTCCAGGATGTAGAAGATGAGCTCCATCACCACCGGCCCCTCGCTGAGCTGGCAGGCCCCGCCGTGGATCACGGGCACCAGGGCACTGTCCAGGTCGTTCATGTACTGCGGCAGGAGGGGCTGCCCGTTGCTGCCAGCCTGGTACCCCACCTGCGAACCCAACACAGCAATAAGAGCACAGCGCCAACTCTACAGGGTGACACGCAGCCCCAGTTTGGCCATGCCGTCCTCCTTGAGCAGTTTGAGGTGCGGGCACAGCGCCACACAGAACGCCCGCGCCACGTTCTCAGTCAGCCGGCTGTGGTCAGCTGGGTCGCTCAGTCCGTTGGGCTGGTCGTCAGTGTGGAGGAAAAACACCTGGAGGAGACAACACACATCGCTCAAAGTACTTTAGGAGACGAAGAGAGGAAAACACATTCATACCTCAATATACAGAAACCAAAACAGgcatttacacacaaaacactgagAAACAGAGACTTAGAGAGTACCTCTGTCCACCGGATGACCTTCCCATTGGCTTTGTACTCTGACCCATGGAAGATCTTGATGCTTGTGATGGACTCCATTGATTTGCCATCGATGGGGCTGATGACCCTGCGTGTTGGAGAAGGACGGGGGATTACAAAGAGGGCACTGAACTACAGATCTCTTCTGCTGCCACAGACCCCCTCCCCAGAGTTGGTGGACAAGAATAGTAGCACCTCACAGCTGCCACCGGAAGCCGGCGCTCACCCCTTGTTGAAGTTGCGGTCGTCCTCCAACCACTGCAGGTGCACATGCTCCTGGATGTCCTCCTGGTCTGTCTTGCCGCAGGGGATGGTGAAATCCTTCATCTCCCGCAGCGCCTGCCGCAGCGCCTCCATCGTCTCGGCGGTGATCTGCACCATCACGCCGTCTGTGGTCGGAAACACAAGCGGTCAATCCTGCTGGACACGGCCAAATCACAACACGGAAGCGGGCGAGACCGGCAGCATACGGAGCAGAAATGAAAACCCTCACCTTCCACAATGCTGGACTTCGCCAGGTACCCGGAGGACGATTTCAGAGCTCCACTGA

Function

symbol description
zfyve9 Enables 1-phosphatidylinositol binding activity and protein domain specific binding activity. Involved in transforming growth factor beta receptor signaling pathway. Located in cytosol and early endosome membrane. Part of protein-containing complex.

NR:

description
PREDICTED: zinc finger FYVE domain-containing protein 9 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00004959 True 1122 mRNA 0.57 3 11217192 11221581

Neighbor

gene id symbol gene type direction distance location
AMCG00004958 NA coding upstream 2683 11201961 ~ 11214509 (+)
AMCG00004957 NA coding upstream 21765 11183257 ~ 11195427 (+)
AMCG00004950 NA coding upstream 207996 10999937 ~ 11009196 (+)
AMCG00004953 LOC107672656,LOC107393234 coding upstream 258409 10956236 ~ 10958783 (+)
AMCG00004952 rad54l coding upstream 267108 10943249 ~ 10950084 (+)
AMCG00004967 txndc12 coding downstream 26559 11248140 ~ 11252830 (+)
AMCG00004970 NA coding downstream 88379 11309960 ~ 11314366 (+)
AMCG00004968 fubp1 coding downstream 95120 11316701 ~ 11325663 (+)
AMCG00004969 LOC106596347 coding downstream 142851 11364432 ~ 11389613 (+)
AMCG00004964 NA coding downstream 179952 11401533 ~ 11410342 (+)
G144549 NA non-coding upstream 17357 11198313 ~ 11199835 (+)
G144534 NA non-coding upstream 77849 11135757 ~ 11139343 (+)
G144512 NA non-coding upstream 219586 10996382 ~ 10997606 (+)
G144315 glul,gs01,LOC107083392,LOC107732203,LOC106584177,LOC108438877,LOC104941255,LOC108272186,LOC108437688,LOC105011759,LOC107733907,LOC106560331 non-coding upstream 1369436 9843429 ~ 9847756 (+)
G144237 NA non-coding upstream 1659717 9554100 ~ 9557475 (+)
G144581 btf3l4,bt3l4,LOC107562065,LOC107655993,LOC104965512,LOC103026176 non-coding downstream 23021 11244602 ~ 11247808 (+)
G144603 nexn non-coding downstream 107696 11329277 ~ 11331419 (+)
G144658 NA non-coding downstream 284101 11505682 ~ 11505883 (+)
G144668 NA non-coding downstream 349355 11570936 ~ 11577247 (+)
G144680 NA non-coding downstream 447894 11669475 ~ 11671442 (+)
AMCG00004935 pbx1b,LOC108443834,LOC108272157,LOC106584178,LOC101069707,LOC105011758,LOC106599262 other upstream 1201768 9948410 ~ 10015424 (+)
AMCG00004921 gbg12,gng12,LOC105895117,LOC107555383,LOC107705318 other upstream 1466415 9700167 ~ 9750777 (+)
AMCG00004870 rpf1,LOC107745333 other upstream 3483133 7718273 ~ 7734059 (+)
AMCG00004868 samd13 other upstream 3524831 7672816 ~ 7692361 (+)
AMCG00004864 NA other upstream 3593122 7608901 ~ 7624070 (+)
G144677 NA other downstream 441100 11662681 ~ 11663368 (+)
G144940 NA other downstream 1558999 12780580 ~ 12781170 (+)
AMCG00005060 LOC106599426 other downstream 2933574 14155155 ~ 14188329 (+)
AMCG00005105 LOC102220226,LOC108442892 other downstream 4158018 15379599 ~ 15384811 (+)
G145932 NA other downstream 6543676 17765257 ~ 17771525 (+)

Expression


Co-expression Network